BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0108300 Os04g0108300|Os04g0108300
(137 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0108300 85 2e-17
Os04g0579900 84 4e-17
Os07g0544201 83 8e-17
Os12g0229800 82 8e-17
Os04g0213500 82 9e-17
Os08g0149701 82 1e-16
Os08g0423900 82 1e-16
Os06g0559700 82 1e-16
Os08g0348900 82 1e-16
Os07g0488700 82 1e-16
Os05g0576000 82 1e-16
Os04g0451500 82 1e-16
Os04g0267900 82 1e-16
Os01g0307101 82 2e-16
Os08g0328000 81 2e-16
Os12g0476400 80 3e-16
Os06g0709600 80 4e-16
Os11g0464300 80 4e-16
Os05g0303200 80 5e-16
Os11g0231000 80 5e-16
Os04g0335500 79 7e-16
Os07g0215700 77 3e-15
Os06g0521825 77 3e-15
Os04g0220000 68 2e-12
Os02g0671600 68 2e-12
Os04g0333800 66 8e-12
>Os04g0108300
Length = 137
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/44 (100%), Positives = 44/44 (100%)
Query: 1 MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSAVF 44
MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSAVF
Sbjct: 1 MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSAVF 44
>Os04g0579900
Length = 211
Score = 83.6 bits (205), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/44 (97%), Positives = 44/44 (100%)
Query: 1 MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSAVF 44
MGEGGGILGEAAYLETAAQAVVV+DPGGGGGEAVAKRSRRSAVF
Sbjct: 1 MGEGGGILGEAAYLETAAQAVVVMDPGGGGGEAVAKRSRRSAVF 44
>Os07g0544201
Length = 204
Score = 82.8 bits (203), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 43/44 (97%), Positives = 43/44 (97%)
Query: 1 MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSAVF 44
MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSAV
Sbjct: 1 MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSAVV 44
>Os12g0229800
Length = 204
Score = 82.4 bits (202), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 43/44 (97%), Positives = 43/44 (97%)
Query: 1 MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSAVF 44
MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSAV
Sbjct: 1 MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSAVV 44
>Os04g0213500
Length = 204
Score = 82.4 bits (202), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 43/44 (97%), Positives = 43/44 (97%)
Query: 1 MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSAVF 44
MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSAV
Sbjct: 1 MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSAVV 44
>Os08g0149701
Length = 174
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/44 (97%), Positives = 43/44 (97%)
Query: 1 MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSAVF 44
MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSAV
Sbjct: 1 MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSAVV 44
>Os08g0423900
Length = 203
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/44 (97%), Positives = 43/44 (97%)
Query: 1 MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSAVF 44
MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSAV
Sbjct: 1 MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSAVV 44
>Os06g0559700
Length = 203
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/44 (97%), Positives = 43/44 (97%)
Query: 1 MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSAVF 44
MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSAV
Sbjct: 1 MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSAVV 44
>Os08g0348900
Length = 203
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/44 (97%), Positives = 43/44 (97%)
Query: 1 MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSAVF 44
MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSAV
Sbjct: 1 MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSAVV 44
>Os07g0488700
Length = 200
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/44 (97%), Positives = 43/44 (97%)
Query: 1 MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSAVF 44
MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSAV
Sbjct: 1 MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSAVV 44
>Os05g0576000
Length = 189
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/44 (97%), Positives = 43/44 (97%)
Query: 1 MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSAVF 44
MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSAV
Sbjct: 1 MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSAVV 44
>Os04g0451500
Length = 125
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/44 (97%), Positives = 43/44 (97%)
Query: 1 MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSAVF 44
MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSAV
Sbjct: 1 MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSAVV 44
>Os04g0267900
Length = 195
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/44 (97%), Positives = 43/44 (97%)
Query: 1 MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSAVF 44
MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSAV
Sbjct: 1 MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSAVV 44
>Os01g0307101
Length = 164
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/44 (97%), Positives = 43/44 (97%)
Query: 1 MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSAVF 44
MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSAV
Sbjct: 1 MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSAVV 44
>Os08g0328000
Length = 150
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/44 (97%), Positives = 43/44 (97%)
Query: 1 MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSAVF 44
MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSAV
Sbjct: 1 MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSAVV 44
>Os12g0476400
Length = 204
Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/44 (95%), Positives = 42/44 (95%)
Query: 1 MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSAVF 44
MGEGGGILGEAAYLETAAQAVVVLDP GGGGEAVAKRSRRSAV
Sbjct: 1 MGEGGGILGEAAYLETAAQAVVVLDPSGGGGEAVAKRSRRSAVV 44
>Os06g0709600
Length = 205
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/44 (95%), Positives = 43/44 (97%)
Query: 1 MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSAVF 44
MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSR+SAV
Sbjct: 1 MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRQSAVV 44
>Os11g0464300
Length = 189
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/44 (95%), Positives = 42/44 (95%)
Query: 1 MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSAVF 44
MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAV KRSRRSAV
Sbjct: 1 MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVVKRSRRSAVV 44
>Os05g0303200
Length = 150
Score = 80.1 bits (196), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/44 (95%), Positives = 42/44 (95%)
Query: 1 MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSAVF 44
MGEGGGILGEA YLETAAQAVVVLDPGGGGGEAVAKRSRRSAV
Sbjct: 1 MGEGGGILGEAVYLETAAQAVVVLDPGGGGGEAVAKRSRRSAVV 44
>Os11g0231000
Length = 155
Score = 80.1 bits (196), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/44 (95%), Positives = 42/44 (95%)
Query: 1 MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSAVF 44
MGEGGGILGEA YLETAAQAVVVLDPGGGGGEAVAKRSRRSAV
Sbjct: 1 MGEGGGILGEAVYLETAAQAVVVLDPGGGGGEAVAKRSRRSAVV 44
>Os04g0335500
Length = 150
Score = 79.3 bits (194), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 41/42 (97%), Positives = 42/42 (100%)
Query: 1 MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSA 42
MG+GGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSA
Sbjct: 1 MGQGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSA 42
>Os07g0215700
Length = 150
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/41 (95%), Positives = 41/41 (100%)
Query: 1 MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRS 41
MGEGGGILG+AAYLETAAQAVV+LDPGGGGGEAVAKRSRRS
Sbjct: 1 MGEGGGILGKAAYLETAAQAVVILDPGGGGGEAVAKRSRRS 41
>Os06g0521825
Length = 138
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/44 (90%), Positives = 41/44 (93%)
Query: 1 MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSAVF 44
MGEGGG+LGEAAYLETAAQAVVVLDP GGGGEA AKRSRRSAV
Sbjct: 1 MGEGGGVLGEAAYLETAAQAVVVLDPSGGGGEAAAKRSRRSAVL 44
>Os04g0220000
Length = 212
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/44 (90%), Positives = 41/44 (93%)
Query: 1 MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSAVF 44
MGEGGG+LGEAAYLETAAQAVVVLDPGGGGGEA AKRSRRS V
Sbjct: 1 MGEGGGVLGEAAYLETAAQAVVVLDPGGGGGEAAAKRSRRSTVV 44
>Os02g0671600
Length = 195
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/44 (93%), Positives = 42/44 (95%)
Query: 1 MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSAVF 44
MGEGGGILGEAAYLETAAQ VVVLDPGGGGG+AVAKRSRRSAV
Sbjct: 1 MGEGGGILGEAAYLETAAQTVVVLDPGGGGGKAVAKRSRRSAVV 44
>Os04g0333800
Length = 145
Score = 65.9 bits (159), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 41/44 (93%), Positives = 42/44 (95%)
Query: 1 MGEGGGILGEAAYLETAAQAVVVLDPGGGGGEAVAKRSRRSAVF 44
MG+GGGILGEAAYLETAAQAVVVLD GGGGGEAVAKRSRRSAV
Sbjct: 1 MGQGGGILGEAAYLETAAQAVVVLDLGGGGGEAVAKRSRRSAVV 44
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.136 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,037,235
Number of extensions: 80119
Number of successful extensions: 794
Number of sequences better than 1.0e-10: 29
Number of HSP's gapped: 791
Number of HSP's successfully gapped: 29
Length of query: 137
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 47
Effective length of database: 12,336,541
Effective search space: 579817427
Effective search space used: 579817427
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 150 (62.4 bits)