Os04g0108300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os04g0108300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.79 | 0.375 | 11 | 0.768 | 0.892 | -0.271 | -0.447 | 2.74 | 0.186 | 21.3 | 48.13 | 89 | -- | -- |
| 66.17 | 0.379 | 11 | 0.782 | 0.875 | -0.908 | -0.946 | -- | 0.206 | 21.2 | 56.02 | 89 | -- | -- |
| 64.44 | 0.374 | 11 | 0.773 | 0.888 | -0.25 | -- | 3 | 0.181 | 21.3 | 48.26 | 89 | -- | -- |
| 67.02 | 0.381 | 11 | 0.766 | 0.908 | -1.19 | -- | -- | 0.175 | 21.1 | 56.18 | 85 | -- | -- |
| 107.32 | 0.482 | 11 | 0.786 | -- | -0.843 | -- | 2.44 | 0.171 | -- | 46.92 | 89 | -- | -- |
| 73.82 | 0.403 | 11 | 0.832 | 0.951 | -- | -0.965 | -- | 0.22 | 21.6 | -- | -- | -- | -- |
| 77.26 | 0.412 | 11 | 0.87 | 0.959 | -- | -- | -- | 0.222 | 21.5 | -- | -- | -- | -- |
| 109.21 | 0.487 | 11 | 0.708 | -- | -1.77 | -- | -- | 0.147 | -- | 54.86 | 86 | -- | -- |
| 81.05 | 0.419 | 11 | -- | 0.853 | -1.65 | -- | -- | 0.0781 | 21.2 | 56.61 | 85 | -- | -- |
| 131.32 | 0.535 | 10.9 | 0.876 | -- | -- | -- | -- | 0.219 | -- | -- | -- | -- | -- |
| 97.2 | 0.461 | 11 | -- | 0.96 | -- | -- | -- | 0.125 | 21.6 | -- | -- | -- | -- |
| 121.9 | 0.514 | 11 | -- | -- | -2.06 | -- | -- | 0.0603 | -- | 55.41 | 85 | -- | -- |
| 151.58 | 0.575 | 11 | -- | -- | -- | -- | -- | 0.122 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 61.00 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 4 | 61.56 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 3 |
| 6 | 61.69 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 9 | 61.79 | temperature | 25 | 720 | < th | dose independent | rect. | 24 | 11 |
| 14 | 62.12 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 4 |
| 21 | 62.47 | humidity | 90 | 90 | < th | dose dependent | rect. | 5 | 7 |
| 32 | 62.63 | humidity | 90 | 30 | < th | dose dependent | rect. | 9 | 3 |
| 33 | 62.63 | humidity | 80 | 90 | < th | dose dependent | rect. | 22 | 14 |
| 35 | 62.64 | humidity | 80 | 90 | < th | dose dependent | rect. | 24 | 12 |
| 39 | 62.66 | temperature | 25 | 720 | > th | dose independent | rect. | 3 | 6 |
| 41 | 62.67 | temperature | 20 | 30 | > th | dose independent | rect. | 20 | 16 |
| 54 | 62.73 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 1 |
| 55 | 62.73 | radiation | 20 | 10 | > th | dose dependent | rect. | 7 | 5 |
| 93 | 62.89 | temperature | 20 | 90 | > th | dose independent | rect. | 9 | 18 |
| 100 | 62.92 | humidity | 90 | 30 | < th | dose dependent | rect. | 11 | 1 |
| 143 | 63.07 | humidity | 90 | 30 | < th | dose dependent | rect. | 9 | 5 |
| 150 | 63.10 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 11 |
| 190 | 63.25 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 5 |
| 191 | 63.26 | temperature | 25 | 270 | > th | dose independent | rect. | 16 | 11 |
| 192 | 63.26 | temperature | 20 | 30 | > th | dose dependent | rect. | 20 | 7 |
| 195 | 63.27 | humidity | 90 | 90 | < th | dose dependent | sin | 4 | NA |
| 207 | 63.33 | humidity | 70 | 30 | < th | dose independent | rect. | 11 | 1 |
| 212 | 63.38 | humidity | 80 | 90 | < th | dose dependent | sin | 6 | NA |
| 253 | 63.48 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 9 | 14 |
| 255 | 63.49 | radiation | 40 | 10 | > th | dose dependent | rect. | 9 | 3 |
| 290 | 63.54 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 11 |
| 327 | 63.60 | radiation | 40 | 720 | > th | dose dependent | rect. | 10 | 1 |
| 357 | 63.64 | temperature | 25 | 270 | > th | dose independent | sin | 14 | NA |
| 359 | 63.64 | temperature | 20 | 30 | > th | dose independent | rect. | 20 | 18 |
| 362 | 63.65 | temperature | 25 | 720 | > th | dose independent | rect. | 1 | 10 |
| 375 | 63.67 | temperature | 25 | 270 | > th | dose dependent | sin | 12 | NA |
| 445 | 63.79 | humidity | 50 | 90 | > th | dose dependent | sin | 4 | NA |
| 455 | 63.84 | radiation | 40 | 90 | > th | dose dependent | rect. | 10 | 1 |
| 468 | 63.86 | radiation | 40 | 90 | > th | dose dependent | rect. | 8 | 4 |
| 487 | 63.87 | humidity | 90 | 30 | < th | dose independent | rect. | 9 | 14 |
| 494 | 63.89 | temperature | 20 | 30 | > th | dose independent | rect. | 11 | 16 |
| 521 | 63.93 | radiation | 40 | 90 | > th | dose dependent | sin | 9 | NA |
| 551 | 63.99 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 576 | 64.07 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 579 | 64.08 | radiation | 40 | 10 | > th | dose independent | rect. | 9 | 3 |
| 612 | 64.11 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 613 | 64.12 | radiation | 20 | 4320 | < th | dose independent | rect. | 21 | 9 |
| 653 | 64.17 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 679 | 64.19 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 691 | 64.23 | radiation | 20 | 30 | > th | dose independent | rect. | 11 | 1 |
| 714 | 64.27 | humidity | 90 | 720 | < th | dose dependent | rect. | 11 | 1 |
| 754 | 64.32 | humidity | 90 | 30 | < th | dose dependent | rect. | 11 | 3 |
| 828 | 64.42 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 13 |
| 846 | 64.47 | humidity | 60 | 270 | < th | dose dependent | rect. | 9 | 2 |
| 856 | 64.49 | temperature | 15 | 720 | > th | dose dependent | rect. | 7 | 16 |
| 865 | 64.50 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 9 |
| 909 | 64.53 | radiation | 20 | 10 | > th | dose dependent | sin | 7 | NA |
| 911 | 64.53 | radiation | 10 | 30 | > th | dose dependent | rect. | 11 | 1 |
| 915 | 64.53 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 18 |
| 923 | 64.54 | humidity | 50 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 971 | 64.58 | temperature | 25 | 270 | > th | dose independent | rect. | 3 | 14 |