BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0107800 Os04g0107800|Os04g0107800
(113 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0107800 236 3e-63
Os02g0447800 107 3e-24
Os08g0291400 90 3e-19
Os02g0599900 90 5e-19
Os11g0468100 87 2e-18
Os04g0421200 79 7e-16
Os05g0241800 78 2e-15
Os12g0459700 74 2e-14
Os07g0217000 72 7e-14
Os09g0284100 66 5e-12
Os08g0436300 66 7e-12
Os11g0573600 64 2e-11
>Os04g0107800
Length = 113
Score = 236 bits (602), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 113/113 (100%), Positives = 113/113 (100%)
Query: 1 MWLVLRAFKDQYATLYNVVRKKQSTVAEVMSTTPLNISFRRAIVGQKLIEWNDLILRLAN 60
MWLVLRAFKDQYATLYNVVRKKQSTVAEVMSTTPLNISFRRAIVGQKLIEWNDLILRLAN
Sbjct: 1 MWLVLRAFKDQYATLYNVVRKKQSTVAEVMSTTPLNISFRRAIVGQKLIEWNDLILRLAN 60
Query: 61 ITLSNEKDCFVIFMSSYWLHFWSTMLPQEEQDTMRNGVKLLESVAKGLLFHYG 113
ITLSNEKDCFVIFMSSYWLHFWSTMLPQEEQDTMRNGVKLLESVAKGLLFHYG
Sbjct: 61 ITLSNEKDCFVIFMSSYWLHFWSTMLPQEEQDTMRNGVKLLESVAKGLLFHYG 113
>Os02g0447800
Length = 188
Score = 107 bits (266), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/114 (52%), Positives = 63/114 (55%), Gaps = 41/114 (35%)
Query: 41 RAIVGQKLIEWNDLILRLANITLSNEKDCFV----------------------------- 71
RAIVGQKLIEWNDLILRLANITL+NE D FV
Sbjct: 66 RAIVGQKLIEWNDLILRLANITLANEADYFVWSLHKNGQFSIQSMYIANMNSNVRIEKRV 125
Query: 72 ------------IFMSSYWLHFWSTMLPQEEQDTMRNGVKLLESVAKGLLFHYG 113
IFM SYW HFWSTMLPQEE DTMRNG LL S A+GLL +YG
Sbjct: 126 LWDLKIPLKIKVIFMFSYWFHFWSTMLPQEEYDTMRNGAMLLVSTAEGLLLNYG 179
>Os08g0291400
Length = 421
Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 66/113 (58%), Gaps = 11/113 (9%)
Query: 2 WLVLRAFKDQYATLYNVVRKKQSTVAEVMSTTPLNISFRRAIVGQKLIEWNDLILRLANI 61
W+ F+ Y LYN+VR K + VA+V+ PLN+ FRRA+VG+ L+ W +L+ ++ +
Sbjct: 286 WIGDLPFEKLYPNLYNLVRNKNAIVADVIDKVPLNVEFRRALVGENLVAWFNLVAKVVLV 345
Query: 62 TLSNEKDCF-----------VIFMSSYWLHFWSTMLPQEEQDTMRNGVKLLES 103
LSN +D VIF +YW WS +L ++E D M+ G KLLE+
Sbjct: 346 RLSNHRDKLIWKVNKTEIFSVIFRGTYWARQWSLLLKEDECDVMKEGCKLLET 398
>Os02g0599900
Length = 74
Score = 89.7 bits (221), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 40/43 (93%), Positives = 40/43 (93%)
Query: 71 VIFMSSYWLHFWSTMLPQEEQDTMRNGVKLLESVAKGLLFHYG 113
VIFMSSYWLH WSTMLPQEEQDTMRNG LLESVAKGLLFHYG
Sbjct: 23 VIFMSSYWLHLWSTMLPQEEQDTMRNGATLLESVAKGLLFHYG 65
>Os11g0468100
Length = 217
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/49 (81%), Positives = 41/49 (83%), Gaps = 4/49 (8%)
Query: 69 CF----VIFMSSYWLHFWSTMLPQEEQDTMRNGVKLLESVAKGLLFHYG 113
CF VIFMSSYWLHFWSTMLPQEEQDTM NG LL+SVA GLLFHYG
Sbjct: 160 CFLHKKVIFMSSYWLHFWSTMLPQEEQDTMHNGATLLDSVAMGLLFHYG 208
>Os04g0421200
Length = 424
Score = 79.0 bits (193), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 63/111 (56%), Gaps = 13/111 (11%)
Query: 2 WLVLRAFKDQYATLYNVVRKKQSTVAEVMSTTPLNISFRRAIVGQKLIEWNDLILRLANI 61
WL ++ + Y +LYN+VR K VA+V+ PLN+SFRRAI+G L W++++ + +I
Sbjct: 308 WLGNQSLEKIYPSLYNLVRNKNVVVAKVLERVPLNVSFRRAIIGDNLKAWHEIVANVVDI 367
Query: 62 TLSNEK------------DC-FVIFMSSYWLHFWSTMLPQEEQDTMRNGVK 99
L +K DC VIF ++W WS +L +E+ + ++N K
Sbjct: 368 NLRGQKDRSHETIQYLFFDCPMVIFRGTHWARLWSLLLKEEDGNMLKNYCK 418
>Os05g0241800
Length = 444
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 65/122 (53%), Gaps = 23/122 (18%)
Query: 2 WLVLRAFKDQYATLYNVVRKKQSTVAEVMSTTPLNISFRRAIVGQKLIEWNDLILRLANI 61
WL ++ + +Y +LYN+VR K VA+V+ PLN+SFRRAI+G L W++++ + +I
Sbjct: 309 WLGNQSLEKRYPSLYNLVRNKNVVVAKVLERVPLNVSFRRAIIGDNLKAWHEIVANVVDI 368
Query: 62 TLSNEKDCF-----------------------VIFMSSYWLHFWSTMLPQEEQDTMRNGV 98
L +KD F VIF ++W WS +L +E+ + ++N
Sbjct: 369 NLRGQKDRFTWDASKNGTFTVNSMYKKLMFGNVIFRGTHWARLWSLLLKEEDGNMLKNYC 428
Query: 99 KL 100
K+
Sbjct: 429 KV 430
>Os12g0459700
Length = 1046
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 48/69 (69%)
Query: 2 WLVLRAFKDQYATLYNVVRKKQSTVAEVMSTTPLNISFRRAIVGQKLIEWNDLILRLANI 61
WL ++QY LYN+VR K TVA+V+ P N+S+RR ++G KL+ WN+L+ R+AN+
Sbjct: 884 WLGEAPLQEQYPCLYNIVRNKHDTVAKVLQNYPPNVSWRRDLIGPKLVAWNNLLPRIANL 943
Query: 62 TLSNEKDCF 70
L+ ++D F
Sbjct: 944 VLTQDQDKF 952
>Os07g0217000
Length = 953
Score = 72.4 bits (176), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 62/119 (52%), Gaps = 29/119 (24%)
Query: 2 WLVLRAFKDQYATLYNVVRKKQSTVAEVMSTTPLNISFRRAIVGQKLIEW---------- 51
W + F ++ LY++VR K +VA VMST PLN+SFRRAIVG+ L +W
Sbjct: 826 WSGISPFATRFPELYSIVRNKNESVAGVMSTRPLNVSFRRAIVGKYLKDWLKVVAEVILL 885
Query: 52 --------NDLILRLANITLSNEKDCFVIFMSSYWLHFWSTMLPQEEQDTMRNGVKLLE 102
ND+I +L VIF ++W WS++L +E+ +++G +LE
Sbjct: 886 MYRDVIPKNDMIWKLK-----------VIFRGTFWAKQWSSLLKEEDGQRVKDGWMILE 933
>Os09g0284100
Length = 1585
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 11/86 (12%)
Query: 29 VMSTTPLNISFRRAIVGQKLIEWNDLILRLANITLSNEKDCF-----------VIFMSSY 77
S PLN+SFRRAIVG L+ W+DL+ ++ ++ LS + D F VIF +Y
Sbjct: 1490 ATSFEPLNVSFRRAIVGDNLVAWHDLVSKVVSVNLSEQNDVFRWRANKNGIFTVIFKGTY 1549
Query: 78 WLHFWSTMLPQEEQDTMRNGVKLLES 103
W WS +L +E+ + K+LE+
Sbjct: 1550 WAQQWSLLLKEEDSHKLNGYCKMLEA 1575
>Os08g0436300
Length = 725
Score = 65.9 bits (159), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 55/107 (51%), Gaps = 23/107 (21%)
Query: 7 AFKDQYATLYNVVRKKQSTVAEVMSTTPLNISFRRAIVGQKLIEWNDLILRLANITLSNE 66
F +Y TLYN+V K +VA VMS PL +SFRRAIVG L W +++ ++ +I L+ +
Sbjct: 613 PFAARYPTLYNLVINKYESVAVVMSKRPLKVSFRRAIVGHNLKAWLEVVSKVISIKLTEQ 672
Query: 67 KD----------CF-------------VIFMSSYWLHFWSTMLPQEE 90
D CF VIF ++W WS +L +E+
Sbjct: 673 NDTFLWETQKNGCFSVNSMYKAIMYREVIFRGTFWARQWSLLLKEED 719
>Os11g0573600
Length = 318
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 37/44 (84%)
Query: 2 WLVLRAFKDQYATLYNVVRKKQSTVAEVMSTTPLNISFRRAIVG 45
WL AFKD+Y +LY++VR+K ST+A VMS+ PLN+SFRR++VG
Sbjct: 258 WLGNLAFKDKYPSLYSIVRRKSSTIANVMSSVPLNVSFRRSLVG 301
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.135 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,287,225
Number of extensions: 103860
Number of successful extensions: 366
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 360
Number of HSP's successfully gapped: 12
Length of query: 113
Length of database: 17,035,801
Length adjustment: 80
Effective length of query: 33
Effective length of database: 12,858,681
Effective search space: 424336473
Effective search space used: 424336473
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)