Os04g0107800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os04g0107800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.64 | 0.251 | 8.9 | 0.00796 | 0.98 | 1.74 | 1.09 | 0.282 | -0.244 | 17.4 | 1.35 | 839 | -- | -- |
| 28.67 | 0.249 | 8.9 | 0.0206 | 0.958 | 1.7 | 0.907 | -- | -0.242 | 17.3 | 1.218 | 836 | -- | -- |
| 29.35 | 0.252 | 8.9 | 0.0417 | 0.937 | 1.66 | -- | -1 | -0.236 | 17.3 | 1.713 | 831 | -- | -- |
| 30.7 | 0.258 | 8.9 | 0.0159 | 0.95 | 1.69 | -- | -- | -0.239 | 17.4 | 1.354 | 841 | -- | -- |
| 39.29 | 0.294 | 8.9 | -0.15 | -- | -0.309 | -- | -0.333 | -0.307 | -- | 22.43 | 2416 | -- | -- |
| 36.04 | 0.281 | 8.89 | -0.137 | 0.44 | -- | 0.164 | -- | -0.31 | 9.8 | -- | -- | -- | -- |
| 36.13 | 0.281 | 8.89 | -0.131 | 0.44 | -- | -- | -- | -0.31 | 9.66 | -- | -- | -- | -- |
| 35.04 | 0.276 | 8.88 | -0.0425 | -- | 0.685 | -- | -- | -0.21 | -- | 16.55 | 1080 | -- | -- |
| 30.7 | 0.258 | 8.9 | -- | 0.944 | 1.69 | -- | -- | -0.24 | 17.4 | 1.355 | 844 | -- | -- |
| 47.63 | 0.322 | 8.9 | -0.135 | -- | -- | -- | -- | -0.309 | -- | -- | -- | -- | -- |
| 36.58 | 0.283 | 8.88 | -- | 0.441 | -- | -- | -- | -0.296 | 9.68 | -- | -- | -- | -- |
| 35.1 | 0.276 | 8.88 | -- | -- | 0.686 | -- | -- | -0.216 | -- | 14.5 | 1084 | -- | -- |
| 48.11 | 0.324 | 8.89 | -- | -- | -- | -- | -- | -0.294 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.77 | temperature | 25 | 720 | < th | dose independent | rect. | 14 | 10 |
| 10 | 27.22 | temperature | 25 | 720 | < th | dose independent | sin | 17 | NA |
| 19 | 27.36 | temperature | 25 | 720 | > th | dose independent | rect. | 11 | 13 |
| 25 | 27.42 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 12 |
| 30 | 27.54 | radiation | 1 | 720 | < th | dose dependent | rect. | 8 | 18 |
| 33 | 27.59 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 10 |
| 41 | 27.63 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 12 |
| 46 | 27.67 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 18 |
| 50 | 27.69 | temperature | 25 | 720 | > th | dose independent | sin | 19 | NA |
| 68 | 27.82 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 7 |
| 83 | 27.88 | radiation | 1 | 720 | > th | dose independent | rect. | 8 | 22 |
| 86 | 27.93 | radiation | 1 | 720 | > th | dose independent | rect. | 8 | 11 |
| 100 | 27.95 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 5 |
| 204 | 28.44 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 6 |
| 240 | 28.60 | radiation | 1 | 720 | < th | dose dependent | sin | 16 | NA |
| 280 | 28.73 | radiation | 1 | 720 | < th | dose independent | sin | 17 | NA |
| 318 | 28.84 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 7 |
| 387 | 29.06 | radiation | 1 | 720 | > th | dose independent | sin | 21 | NA |
| 438 | 29.18 | temperature | 25 | 720 | > th | dose dependent | sin | 12 | NA |
| 473 | 29.31 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 9 |
| 475 | 29.32 | temperature | 20 | 720 | > th | dose dependent | rect. | 11 | 12 |
| 521 | 29.45 | radiation | 1 | 720 | > th | dose independent | rect. | 16 | 3 |
| 540 | 29.47 | humidity | 60 | 14400 | > th | dose independent | rect. | 3 | 4 |
| 549 | 29.49 | radiation | 20 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 616 | 29.63 | temperature | 10 | 720 | > th | dose dependent | sin | 17 | NA |
| 624 | 29.64 | radiation | 20 | 4320 | < th | dose dependent | rect. | 3 | 2 |
| 626 | 29.65 | humidity | 60 | 14400 | > th | dose independent | rect. | 1 | 6 |
| 663 | 29.71 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 16 |
| 664 | 29.72 | radiation | 1 | 720 | > th | dose independent | sin | 15 | NA |
| 699 | 29.77 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 4 |
| 746 | 29.86 | temperature | 25 | 720 | > th | dose independent | rect. | 10 | 23 |
| 757 | 29.87 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 4 |
| 758 | 29.87 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 9 |
| 796 | 29.93 | radiation | 10 | 1440 | < th | dose independent | rect. | 3 | 2 |
| 812 | 29.94 | radiation | 1 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 820 | 29.96 | radiation | 1 | 720 | < th | dose independent | rect. | 20 | 22 |
| 827 | 29.97 | wind | 7 | 43200 | > th | dose dependent | rect. | 14 | 4 |
| 837 | 29.99 | radiation | 20 | 14400 | < th | dose independent | rect. | 1 | 5 |
| 842 | 30.00 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 864 | 30.02 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 23 |
| 866 | 30.02 | radiation | 20 | 4320 | < th | dose dependent | rect. | 1 | 4 |
| 935 | 30.09 | temperature | 25 | 720 | > th | dose independent | no | NA | NA |
| 984 | 30.15 | temperature | 25 | 720 | < th | dose independent | no | NA | NA |
| 986 | 30.15 | wind | 7 | 43200 | > th | dose independent | rect. | 12 | 6 |
| 999 | 30.16 | temperature | 25 | 720 | > th | dose independent | rect. | 21 | 23 |