BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0101300 Os04g0101300|Os04g0101300
         (393 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0101300  MRG family protein                                  800   0.0  
Os11g0545600  MRG family protein                                  360   1e-99

>Os04g0101300 MRG family protein
          Length = 393

 Score =  800 bits (2067), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/393 (100%), Positives = 393/393 (100%)

Query: 1   MGGSSNTNTNTRSGGGKDKHDETSPSFKEGERVLAYHGPLLYEAKILSSGFLKVQKSENK 60
           MGGSSNTNTNTRSGGGKDKHDETSPSFKEGERVLAYHGPLLYEAKILSSGFLKVQKSENK
Sbjct: 1   MGGSSNTNTNTRSGGGKDKHDETSPSFKEGERVLAYHGPLLYEAKILSSGFLKVQKSENK 60

Query: 61  EDEWRYHVHYLGLVSIIALMLFSCLSALLIQVNGLLIMFIFNEYSVNPIEGLVSIIALRL 120
           EDEWRYHVHYLGLVSIIALMLFSCLSALLIQVNGLLIMFIFNEYSVNPIEGLVSIIALRL
Sbjct: 61  EDEWRYHVHYLGLVSIIALMLFSCLSALLIQVNGLLIMFIFNEYSVNPIEGLVSIIALRL 120

Query: 121 FSCLSALLIQVNSLLIVFIFNEYSWDEWVTNDRLLKLTDENIRKQQELEKSQAVDKSVKS 180
           FSCLSALLIQVNSLLIVFIFNEYSWDEWVTNDRLLKLTDENIRKQQELEKSQAVDKSVKS
Sbjct: 121 FSCLSALLIQVNSLLIVFIFNEYSWDEWVTNDRLLKLTDENIRKQQELEKSQAVDKSVKS 180

Query: 181 GRSAQHKPKGSNADAKTDKEDTKIIVKGKKRKSQPGGTEEKERKSSESLFMSHFPSTLKK 240
           GRSAQHKPKGSNADAKTDKEDTKIIVKGKKRKSQPGGTEEKERKSSESLFMSHFPSTLKK
Sbjct: 181 GRSAQHKPKGSNADAKTDKEDTKIIVKGKKRKSQPGGTEEKERKSSESLFMSHFPSTLKK 240

Query: 241 QLVDDWEFVTQLGKEKLVKLPRSPTVDDILKKYLEHRTKKDNKINDSYAEILKGLRCYFD 300
           QLVDDWEFVTQLGKEKLVKLPRSPTVDDILKKYLEHRTKKDNKINDSYAEILKGLRCYFD
Sbjct: 241 QLVDDWEFVTQLGKEKLVKLPRSPTVDDILKKYLEHRTKKDNKINDSYAEILKGLRCYFD 300

Query: 301 KALPAMLLYKKEQQQYTEEVKGDVSPSIIYGAEHLLRLFVKLPELLASVNMEEDALNKLQ 360
           KALPAMLLYKKEQQQYTEEVKGDVSPSIIYGAEHLLRLFVKLPELLASVNMEEDALNKLQ
Sbjct: 301 KALPAMLLYKKEQQQYTEEVKGDVSPSIIYGAEHLLRLFVKLPELLASVNMEEDALNKLQ 360

Query: 361 QKLLDILKFLQKNQSSFFLSAYDGGSKVLQKVS 393
           QKLLDILKFLQKNQSSFFLSAYDGGSKVLQKVS
Sbjct: 361 QKLLDILKFLQKNQSSFFLSAYDGGSKVLQKVS 393



>Os11g0545600 MRG family protein
          Length = 230

 Score =  360 bits (924), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 179/187 (95%), Positives = 181/187 (96%), Gaps = 2/187 (1%)

Query: 201 DTKIIVKGKKRKSQPGGTEEKERKSSESLFMSHFPSTLKKQLVDDWEFVTQLGKEKLVKL 260
           D K  VKGKKRKSQPGGTEEKERKSSESLFMSHFPSTLKKQLVDDWEFVTQLGK  LVKL
Sbjct: 38  DVKTAVKGKKRKSQPGGTEEKERKSSESLFMSHFPSTLKKQLVDDWEFVTQLGK--LVKL 95

Query: 261 PRSPTVDDILKKYLEHRTKKDNKINDSYAEILKGLRCYFDKALPAMLLYKKEQQQYTEEV 320
           PRSPTVDDILKKYLEHRTKKDNKINDSYAEILKGLRCYFDKALPAMLLYKKE+QQY+EEV
Sbjct: 96  PRSPTVDDILKKYLEHRTKKDNKINDSYAEILKGLRCYFDKALPAMLLYKKERQQYSEEV 155

Query: 321 KGDVSPSIIYGAEHLLRLFVKLPELLASVNMEEDALNKLQQKLLDILKFLQKNQSSFFLS 380
           KGDVSPS IYGAEHLLRLFVKLPELLASVNMEEDALNKLQQKLLDILKFLQKNQSSFFLS
Sbjct: 156 KGDVSPSTIYGAEHLLRLFVKLPELLASVNMEEDALNKLQQKLLDILKFLQKNQSSFFLS 215

Query: 381 AYDGGSK 387
           AYDGGSK
Sbjct: 216 AYDGGSK 222



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.133    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,907,225
Number of extensions: 521092
Number of successful extensions: 1759
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1756
Number of HSP's successfully gapped: 2
Length of query: 393
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 290
Effective length of database: 11,657,759
Effective search space: 3380750110
Effective search space used: 3380750110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)