Os04g0101300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : MRG family protein.
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Os04g0101300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : MRG family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.27 | 0.227 | 12.2 | -1.5 | 0.344 | -0.0368 | -0.637 | 4.02 | -0.224 | 16.9 | 29.88 | 1628 | -- | -- |
| 25 | 0.233 | 12.1 | -0.777 | 0.332 | 0.432 | -0.665 | -- | -0.181 | 17 | 30.3 | 3145 | -- | -- |
| 24.18 | 0.229 | 12.2 | -1.47 | 0.353 | -0.0175 | -- | 4.11 | -0.224 | 17.1 | 29.8 | 1750 | -- | -- |
| 26.04 | 0.238 | 12.1 | -0.775 | 0.339 | 0.437 | -- | -- | -0.183 | 17.3 | 30.4 | 3229 | -- | -- |
| 30.31 | 0.256 | 12.2 | -1.41 | -- | 0.0224 | -- | 3.44 | -0.23 | -- | 29.8 | 1560 | -- | -- |
| 31.18 | 0.262 | 12.1 | -0.873 | 0.362 | -- | -0.61 | -- | -0.107 | 16.8 | -- | -- | -- | -- |
| 32.13 | 0.265 | 12.1 | -0.875 | 0.359 | -- | -- | -- | -0.11 | 17 | -- | -- | -- | -- |
| 32.08 | 0.264 | 12.1 | -0.775 | -- | 0.41 | -- | -- | -0.197 | -- | 30.35 | 3011 | -- | -- |
| 40.63 | 0.297 | 12.1 | -- | 0.352 | 0.593 | -- | -- | -0.106 | 17.3 | 29.9 | 3247 | -- | -- |
| 38.92 | 0.292 | 12.1 | -0.888 | -- | -- | -- | -- | -0.119 | -- | -- | -- | -- | -- |
| 52.32 | 0.338 | 12.1 | -- | 0.375 | -- | -- | -- | -0.0124 | 16.9 | -- | -- | -- | -- |
| 46.96 | 0.319 | 12.1 | -- | -- | 0.514 | -- | -- | -0.117 | -- | 29.99 | 2947 | -- | -- |
| 59.73 | 0.361 | 12.1 | -- | -- | -- | -- | -- | -0.0205 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.16 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 7 | 2 |
| 12 | 23.40 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 17 | 23.43 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 24 | 12 |
| 19 | 23.44 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 1 | 10 |
| 33 | 23.49 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 42 | 23.51 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 14 | 4 |
| 71 | 23.60 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 78 | 23.61 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 79 | 23.61 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 10 | 7 |
| 80 | 23.61 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 20 | 9 |
| 81 | 23.62 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 8 | 9 |
| 82 | 23.62 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 20 | 9 |
| 102 | 23.63 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 2 | 15 |
| 104 | 23.63 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 20 | 21 |
| 107 | 23.64 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 22 | 7 |
| 110 | 23.64 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 8 | 9 |
| 128 | 23.65 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 10 | 7 |
| 147 | 23.66 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 2 | 3 |
| 152 | 23.66 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 22 | 7 |
| 165 | 23.68 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 7 | NA |
| 167 | 23.69 | temperature | 30.0 | 1440 | < th | dose independent | sin | 2 | NA |
| 171 | 23.69 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 10 | 5 |
| 210 | 23.71 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 2 | 3 |
| 266 | 23.73 | temperature | 30.0 | 1440 | > th | dose independent | sin | 1 | NA |
| 280 | 23.74 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 291 | 23.74 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 314 | 23.75 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 5 |
| 335 | 23.77 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 16 | 13 |
| 354 | 23.79 | temperature | 30.0 | 1440 | < th | dose independent | no | NA | NA |
| 364 | 23.79 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 8 | 13 |
| 390 | 23.79 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 7 | 20 |
| 413 | 23.79 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 10 | 23 |
| 466 | 23.80 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 14 | 23 |
| 471 | 23.81 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 472 | 23.81 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 478 | 23.81 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 6 | 4 |
| 485 | 23.81 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 10 | 11 |
| 509 | 23.81 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 10 | 23 |
| 512 | 23.81 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 560 | 23.84 | temperature | 30.0 | 1440 | > th | dose independent | no | NA | NA |
| 562 | 23.84 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 695 | 23.85 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 12 | 23 |
| 699 | 23.85 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 10 | 1 |
| 717 | 23.86 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 14 | 23 |
| 724 | 23.87 | atmosphere | 1000.0 | 43200 | > th | dose independent | sin | 12 | NA |
| 727 | 23.87 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 5 | 5 |
| 745 | 23.88 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 772 | 23.89 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 808 | 23.90 | atmosphere | 1000.0 | 43200 | < th | dose independent | sin | 12 | NA |
| 826 | 23.91 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 18 | 21 |
| 833 | 23.92 | temperature | 15.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 837 | 23.92 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 15 | 7 |
| 838 | 23.92 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 9 | 9 |
| 840 | 23.93 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 15 | 2 |
| 872 | 23.95 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 15 | 2 |
| 885 | 23.95 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 934 | 23.97 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 12 | 9 |
| 960 | 23.99 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 966 | 24.00 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 995 | 24.00 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 8 | 13 |