BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0862100 Os03g0862100|AK066909
         (918 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0862100  Conserved hypothetical protein                     1513   0.0  

>Os03g0862100 Conserved hypothetical protein
          Length = 918

 Score = 1513 bits (3917), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 759/905 (83%), Positives = 759/905 (83%)

Query: 14  CCLQLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAGWSDGDEQDEQDKSXXXXXX 73
           CCLQLH                                FAGWSDGDEQDEQDKS      
Sbjct: 14  CCLQLHRLLRPAALLPSPPRLRLRLRPLRADSSPSPDAFAGWSDGDEQDEQDKSPGPFRG 73

Query: 74  XXXXXXXXXXXXXXXXXXXISFRSNAANGPKAQIDTSSTNSQEAPYSTDNTCKEDGLKDA 133
                              ISFRSNAANGPKAQIDTSSTNSQEAPYSTDNTCKEDGLKDA
Sbjct: 74  LLGPGLAGLFFLAGLTFAAISFRSNAANGPKAQIDTSSTNSQEAPYSTDNTCKEDGLKDA 133

Query: 134 QVSLPSDSKGETSLDDEAHSSTDPLPVQVNATAEGSTEHETQHPLQNSELVPPDKYVPSE 193
           QVSLPSDSKGETSLDDEAHSSTDPLPVQVNATAEGSTEHETQHPLQNSELVPPDKYVPSE
Sbjct: 134 QVSLPSDSKGETSLDDEAHSSTDPLPVQVNATAEGSTEHETQHPLQNSELVPPDKYVPSE 193

Query: 194 DAGQAHNLVASDGAESLVSPLSNSTEPSIAAYDSPDKLYGVGPSEGTPYVEDTLNCEITL 253
           DAGQAHNLVASDGAESLVSPLSNSTEPSIAAYDSPDKLYGVGPSEGTPYVEDTLNCEITL
Sbjct: 194 DAGQAHNLVASDGAESLVSPLSNSTEPSIAAYDSPDKLYGVGPSEGTPYVEDTLNCEITL 253

Query: 254 PENQHLGETLTSDTMLGSGDASLIQEIXXXXXXXXXXXXXXEQNPELHRKNGISPSRMPD 313
           PENQHLGETLTSDTMLGSGDASLIQEI              EQNPELHRKNGISPSRMPD
Sbjct: 254 PENQHLGETLTSDTMLGSGDASLIQEISDTAASSDAKDKDTEQNPELHRKNGISPSRMPD 313

Query: 314 YTEYGHADQLLSFGSNDVSTEANKPGNGVETLASNQNEGADELENQNSLYESTTPDKSFA 373
           YTEYGHADQLLSFGSNDVSTEANKPGNGVETLASNQNEGADELENQNSLYESTTPDKSFA
Sbjct: 314 YTEYGHADQLLSFGSNDVSTEANKPGNGVETLASNQNEGADELENQNSLYESTTPDKSFA 373

Query: 374 SSGIPAPTLLSAALRVRTGQIMXXXXXXXXXXXXXXXXXXXKVIEPDAQAGDLCTRREYA 433
           SSGIPAPTLLSAALRVRTGQIM                   KVIEPDAQAGDLCTRREYA
Sbjct: 374 SSGIPAPTLLSAALRVRTGQIMVPAAVDPAQASALAALQVLKVIEPDAQAGDLCTRREYA 433

Query: 434 RWLVVASNCLSRNTSSKVYPAMYIENVTELAFDDITPEDFDFPFIQGLAEAGLISSKLSR 493
           RWLVVASNCLSRNTSSKVYPAMYIENVTELAFDDITPEDFDFPFIQGLAEAGLISSKLSR
Sbjct: 434 RWLVVASNCLSRNTSSKVYPAMYIENVTELAFDDITPEDFDFPFIQGLAEAGLISSKLSR 493

Query: 494 SDMNVPLDVDNLHNLFSPECPVSRQDLVSWKMALDKRQLPEVDKTSMYKASGYMDVDKIN 553
           SDMNVPLDVDNLHNLFSPECPVSRQDLVSWKMALDKRQLPEVDKTSMYKASGYMDVDKIN
Sbjct: 494 SDMNVPLDVDNLHNLFSPECPVSRQDLVSWKMALDKRQLPEVDKTSMYKASGYMDVDKIN 553

Query: 554 AAAWPALVADLDAGDQSITALAFGFTRLFQPDKPVTKGQVALALSTGDSADVVMEELARI 613
           AAAWPALVADLDAGDQSITALAFGFTRLFQPDKPVTKGQVALALSTGDSADVVMEELARI
Sbjct: 554 AAAWPALVADLDAGDQSITALAFGFTRLFQPDKPVTKGQVALALSTGDSADVVMEELARI 613

Query: 614 EAEKIAEDAVNAHGELVAQVEKDLNATFXXXXXXXXXXXXXXXXXXXXXXXXXDKLRAER 673
           EAEKIAEDAVNAHGELVAQVEKDLNATF                         DKLRAER
Sbjct: 614 EAEKIAEDAVNAHGELVAQVEKDLNATFERELTKEREKIERLEKLAEEARVELDKLRAER 673

Query: 674 VEENNALIRGRASVESEMEVLSKLRSEVEEQLQSVLSKKVEISFEKNRIEKLQTEIENDR 733
           VEENNALIRGRASVESEMEVLSKLRSEVEEQLQSVLSKKVEISFEKNRIEKLQTEIENDR
Sbjct: 674 VEENNALIRGRASVESEMEVLSKLRSEVEEQLQSVLSKKVEISFEKNRIEKLQTEIENDR 733

Query: 734 QAVVQLQYELEVERKALSMARAWXXXXXXXXXXXXXXXXXXXNQWERHGIKVVVEGGLED 793
           QAVVQLQYELEVERKALSMARAW                   NQWERHGIKVVVEGGLED
Sbjct: 734 QAVVQLQYELEVERKALSMARAWAEDEAKKAREHARALEEARNQWERHGIKVVVEGGLED 793

Query: 794 DASAGVTWANAGKEHQVDEAINRAGSLLEKLKSMSAEIKVRSCHSLERVIQHVRSFISIL 853
           DASAGVTWANAGKEHQVDEAINRAGSLLEKLKSMSAEIKVRSCHSLERVIQHVRSFISIL
Sbjct: 794 DASAGVTWANAGKEHQVDEAINRAGSLLEKLKSMSAEIKVRSCHSLERVIQHVRSFISIL 853

Query: 854 KQGAEEATQRFTDXXXXXXXXXXXXSSEAQDNVYVFGSTIGDKSKRVVEDCKEGLEKFVH 913
           KQGAEEATQRFTD            SSEAQDNVYVFGSTIGDKSKRVVEDCKEGLEKFVH
Sbjct: 854 KQGAEEATQRFTDLGAAAALKAKKLSSEAQDNVYVFGSTIGDKSKRVVEDCKEGLEKFVH 913

Query: 914 RFKTD 918
           RFKTD
Sbjct: 914 RFKTD 918



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.310    0.127    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 24,576,591
Number of extensions: 923281
Number of successful extensions: 2899
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2892
Number of HSP's successfully gapped: 1
Length of query: 918
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 808
Effective length of database: 11,292,261
Effective search space: 9124146888
Effective search space used: 9124146888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 161 (66.6 bits)