BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0862000 Os03g0862000|AK119361
         (421 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0862000  Conserved hypothetical protein                      455   e-128

>Os03g0862000 Conserved hypothetical protein
          Length = 421

 Score =  455 bits (1171), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 249/397 (62%), Positives = 249/397 (62%)

Query: 1   MVPVNFGDSSSIPPVDAVVPMAMAPRXXXXXXXXXXXXXXPRXXXXXXXXXXXXXXXXXX 60
           MVPVNFGDSSSIPPVDAVVPMAMAPR              PR                  
Sbjct: 1   MVPVNFGDSSSIPPVDAVVPMAMAPRLLCFLFLLLQLLLFPRVAAIVLAATPVLLLAAFL 60

Query: 61  XXXXXXYSEPNNNNEPDHLIPIRIRSRNPHAHXXXXXXXXXXXXXXXXXXXXXXXXXXXE 120
                 YSEPNNNNEPDHLIPIRIRSRNPHAH                           E
Sbjct: 61  LALVLVYSEPNNNNEPDHLIPIRIRSRNPHAHDHASSCTASGSSDDDDDAQDSDSESVSE 120

Query: 121 PADDEKAAVWTAEDEKSIQNIGSLELERNAAVEKLMSSRSMHRYYAAXXXXXXXXXXXXX 180
           PADDEKAAVWTAEDEKSIQNIGSLELERNAAVEKLMSSRSMHRYYAA             
Sbjct: 121 PADDEKAAVWTAEDEKSIQNIGSLELERNAAVEKLMSSRSMHRYYAADRDLIDLDLDGDG 180

Query: 181 HQLPPGSAPSMHRNPFFFHDDQQAAASTAKLFSRHESFRPYFVADKTQQPVVLEXXXXXX 240
           HQLPPGSAPSMHRNPFFFHDDQQAAASTAKLFSRHESFRPYFVADKTQQPVVLE      
Sbjct: 181 HQLPPGSAPSMHRNPFFFHDDQQAAASTAKLFSRHESFRPYFVADKTQQPVVLESSGGGG 240

Query: 241 XXXXXXXXXXXXXDRAGQHMKQEAVADFSSSSKAMVVTVDAELPNPKSMVTVDVELIXXX 300
                        DRAGQHMKQEAVADFSSSSKAMVVTVDAELPNPKSMVTVDVELI   
Sbjct: 241 SSSSLSSSSSASGDRAGQHMKQEAVADFSSSSKAMVVTVDAELPNPKSMVTVDVELISDS 300

Query: 301 XXXXXXXIMSLPGQQITKVAXXXXXXXXXXXXXXXXXITRQVNETLXXXXXXXXXXXXXX 360
                  IMSLPGQQITKVA                 ITRQVNETL              
Sbjct: 301 SDDDDDDIMSLPGQQITKVASSMSDDDDGESSFEVESITRQVNETLHAHAAAAAAAAAAA 360

Query: 361 XXXXXXXXXXNKLASIEEDERRERDVFPSPSPFLRQT 397
                     NKLASIEEDERRERDVFPSPSPFLRQT
Sbjct: 361 REGREEKEEKNKLASIEEDERRERDVFPSPSPFLRQT 397



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.127    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,316,480
Number of extensions: 205451
Number of successful extensions: 324
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 319
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 317
Effective length of database: 11,605,545
Effective search space: 3678957765
Effective search space used: 3678957765
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 157 (65.1 bits)