Os03g0862000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0862000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 75.52 | 0.408 | 3.7 | -3.49 | 0.116 | 110 | -0.209 | -636 | 0.0645 | 5.25 | 1000 | 87 | 4 | 2.97 |
| 94.78 | 0.457 | 3.1 | 0.104 | 0.136 | 2.93 | -0.0395 | -- | 0.0608 | 6.22 | 1000 | 87 | 4 | 2.97 |
| 75.54 | 0.405 | 3.68 | -3.42 | 0.116 | 110 | -- | -636 | 0.0655 | 5.93 | 1000 | 84 | 4.02 | 2.97 |
| 92.62 | 0.448 | 3.1 | 0.0926 | 0.119 | 2.94 | -- | -- | 0.066 | 6.2 | 999.9 | 83 | 4.1 | 3.03 |
| 76.28 | 0.407 | 3.69 | -3.4 | -- | 110 | -- | -638 | 0.0678 | -- | 1000 | 82 | 4.02 | 2.97 |
| 111.6 | 0.495 | 3.1 | 0.132 | 0.188 | -- | 0.201 | -- | 0.0478 | 6.66 | -- | -- | -- | -- |
| 111.68 | 0.495 | 3.1 | 0.134 | 0.19 | -- | -- | -- | 0.0468 | 6.25 | -- | -- | -- | -- |
| 93.34 | 0.45 | 3.1 | 0.0961 | -- | 3 | -- | -- | 0.0695 | -- | 1000 | 83 | 4.1 | 3.03 |
| 92.84 | 0.449 | 3.1 | -- | 0.12 | 2.96 | -- | -- | 0.0558 | 6.16 | 999.8 | 74 | 4.17 | 3.05 |
| 113.55 | 0.498 | 3.1 | 0.139 | -- | -- | -- | -- | 0.051 | -- | -- | -- | -- | -- |
| 112.15 | 0.495 | 3.1 | -- | 0.192 | -- | -- | -- | 0.0319 | 6.22 | -- | -- | -- | -- |
| 93.58 | 0.451 | 3.1 | -- | -- | 3.02 | -- | -- | 0.0586 | -- | 1000 | 67 | 4.15 | 3.15 |
| 114.06 | 0.499 | 3.1 | -- | -- | -- | -- | -- | 0.0355 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 75.54 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 4 | 3 |
| 2 | 75.64 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 4 | 3 |
| 5 | 77.81 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 5 | 1 |
| 12 | 77.81 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 93 | 94.35 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 2 | 6 |
| 239 | 100.73 | wind | 1.0 | 90 | < th | dose dependent | rect. | 5 | 1 |
| 252 | 101.69 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 4 | 11 |
| 264 | 102.03 | wind | 1.0 | 270 | < th | dose dependent | rect. | 3 | 1 |
| 271 | 102.21 | atmosphere | 1000.0 | 90 | > th | dose independent | sin | 6 | NA |
| 275 | 102.29 | atmosphere | 1000.0 | 10 | > th | dose independent | sin | 5 | NA |
| 282 | 102.41 | atmosphere | 1000.0 | 90 | < th | dose independent | sin | 5 | NA |
| 288 | 102.49 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 399 | 103.59 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 3 | 10 |
| 430 | 103.83 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 24 | 12 |
| 446 | 103.95 | wind | 1.0 | 270 | < th | dose independent | rect. | 3 | 1 |
| 510 | 104.37 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 24 | 11 |
| 518 | 104.42 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 3 | 8 |
| 523 | 104.45 | temperature | 15.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 525 | 104.47 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 23 | 8 |
| 610 | 104.85 | wind | 1.0 | 90 | < th | dose independent | rect. | 5 | 1 |
| 692 | 105.17 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 3 | 14 |
| 694 | 105.17 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 3 | 23 |
| 696 | 105.17 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 769 | 105.38 | atmosphere | 1005.0 | 90 | < th | dose dependent | sin | 6 | NA |
| 795 | 105.47 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 24 | 13 |
| 811 | 105.50 | atmosphere | 1005.0 | 90 | < th | dose dependent | rect. | 4 | 11 |
| 839 | 105.59 | wind | 1.0 | 720 | < th | dose dependent | rect. | 18 | 3 |
| 846 | 105.61 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 4 | 19 |
| 881 | 105.71 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 19 | 16 |
| 884 | 105.71 | wind | 1.0 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 889 | 105.74 | wind | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 897 | 105.75 | wind | 3.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 898 | 105.75 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 908 | 105.77 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 911 | 105.78 | temperature | 25.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 938 | 105.80 | humidity | 80.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 947 | 105.81 | temperature | 20.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 955 | 105.82 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 958 | 105.82 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 961 | 105.82 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 962 | 105.82 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 964 | 105.82 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 969 | 105.82 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 972 | 105.82 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 976 | 105.82 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 981 | 105.82 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 984 | 105.83 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 1 |