BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0858400 Os03g0858400|AK102968
         (444 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0858400  WD40-like domain containing protein                 816   0.0  

>Os03g0858400 WD40-like domain containing protein
          Length = 444

 Score =  816 bits (2109), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/415 (95%), Positives = 396/415 (95%)

Query: 30  YLRRKRAAIAHLPPSATAAAPDQPKQVRPSNQNQPKKGHQRSHHAVDKDAAKKHHHLDVN 89
           YLRRKRAAIAHLPPSATAAAPDQPKQVRPSNQNQPKKGHQRSHHAVDKDAAKKHHHLDVN
Sbjct: 30  YLRRKRAAIAHLPPSATAAAPDQPKQVRPSNQNQPKKGHQRSHHAVDKDAAKKHHHLDVN 89

Query: 90  TLRGHTDSVTALHFSDDACNLATVCADGAVRVFRVDDVSSKSFKILRINLPAGAHPTAIA 149
           TLRGHTDSVTALHFSDDACNLATVCADGAVRVFRVDDVSSKSFKILRINLPAGAHPTAIA
Sbjct: 90  TLRGHTDSVTALHFSDDACNLATVCADGAVRVFRVDDVSSKSFKILRINLPAGAHPTAIA 149

Query: 150 FXXXXXXXXXXXXXXXXXXXYMYADVGAPPAGGNKQQGKLSPPEIKWEHRKIHGKESVLN 209
           F                   YMYADVGAPPAGGNKQQGKLSPPEIKWEHRKIHGKESVLN
Sbjct: 150 FSQGASSVVVAAQALLGSSLYMYADVGAPPAGGNKQQGKLSPPEIKWEHRKIHGKESVLN 209

Query: 210 LAAARATYGTGDGSTILISCSEATDIKIWHGKSGKELGTVDTNQLKNNMADISPNGRFIA 269
           LAAARATYGTGDGSTILISCSEATDIKIWHGKSGKELGTVDTNQLKNNMADISPNGRFIA
Sbjct: 210 LAAARATYGTGDGSTILISCSEATDIKIWHGKSGKELGTVDTNQLKNNMADISPNGRFIA 269

Query: 270 AAAFTADVKVWEIVYSKDSSVKEVNKVMQLKGHKSAVTCLCFALNSEQIITASKDGTIRV 329
           AAAFTADVKVWEIVYSKDSSVKEVNKVMQLKGHKSAVTCLCFALNSEQIITASKDGTIRV
Sbjct: 270 AAAFTADVKVWEIVYSKDSSVKEVNKVMQLKGHKSAVTCLCFALNSEQIITASKDGTIRV 329

Query: 330 WNINVRYHLDEDPKTLRVLPIPLHDSKGSVCQYDHMSVSPDEKVLATTSGSTLQWLCVET 389
           WNINVRYHLDEDPKTLRVLPIPLHDSKGSVCQYDHMSVSPDEKVLATTSGSTLQWLCVET
Sbjct: 330 WNINVRYHLDEDPKTLRVLPIPLHDSKGSVCQYDHMSVSPDEKVLATTSGSTLQWLCVET 389

Query: 390 GAVLDTAEKAHEGDITGIAWAPRTIPNGGTPAFVLATAGVDKKVKLWLAPKAIST 444
           GAVLDTAEKAHEGDITGIAWAPRTIPNGGTPAFVLATAGVDKKVKLWLAPKAIST
Sbjct: 390 GAVLDTAEKAHEGDITGIAWAPRTIPNGGTPAFVLATAGVDKKVKLWLAPKAIST 444



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.130    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,416,858
Number of extensions: 648189
Number of successful extensions: 3010
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 3013
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 340
Effective length of database: 11,605,545
Effective search space: 3945885300
Effective search space used: 3945885300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)