Os03g0858400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : WD40-like domain containing protein.
FiT-DB / Search/ Help/ Sample detail
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Os03g0858400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : WD40-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.1 | 0.253 | 10.5 | 0.855 | 0.875 | -0.472 | -0.0266 | 0.597 | 0.379 | 21.7 | 85.15 | 1302 | -- | -- |
| 29.53 | 0.253 | 10.5 | 0.81 | 0.888 | -0.438 | -0.00501 | -- | 0.383 | 21.7 | 85 | 1224 | -- | -- |
| 29.07 | 0.251 | 10.5 | 0.857 | 0.894 | -0.487 | -- | 0.588 | 0.38 | 21.7 | 85.01 | 1242 | -- | -- |
| 29.48 | 0.253 | 10.5 | 0.804 | 0.9 | -0.439 | -- | -- | 0.368 | 21.7 | 85 | 1217 | -- | -- |
| 70.04 | 0.392 | 10.5 | 0.761 | -- | -0.451 | -- | 0.698 | 0.357 | -- | 86 | 1507 | -- | -- |
| 33.65 | 0.272 | 10.5 | 0.744 | 0.85 | -- | -0.0285 | -- | 0.376 | 21.4 | -- | -- | -- | -- |
| 33.66 | 0.272 | 10.5 | 0.745 | 0.85 | -- | -- | -- | 0.376 | 21.4 | -- | -- | -- | -- |
| 70.93 | 0.394 | 10.5 | 0.758 | -- | -0.432 | -- | -- | 0.357 | -- | 86 | 1507 | -- | -- |
| 45.47 | 0.314 | 10.6 | -- | 0.893 | -0.381 | -- | -- | 0.317 | 21.8 | 94 | 1227 | -- | -- |
| 76.02 | 0.407 | 10.5 | 0.75 | -- | -- | -- | -- | 0.373 | -- | -- | -- | -- | -- |
| 48.27 | 0.325 | 10.6 | -- | 0.851 | -- | -- | -- | 0.293 | 21.5 | -- | -- | -- | -- |
| 79.92 | 0.416 | 10.5 | -- | -- | 0.663 | -- | -- | 0.283 | -- | 97.03 | 700 | -- | -- |
| 90.84 | 0.445 | 10.5 | -- | -- | -- | -- | -- | 0.29 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.19 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 11 | 19 |
| 3 | 28.27 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 5 | 28.33 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 14 | 3 |
| 6 | 28.33 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 13 | 5 |
| 7 | 28.33 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 9 | 28.36 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 13 | 14 |
| 21 | 28.38 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 25 | 28.38 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 13 |
| 27 | 28.38 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 16 |
| 106 | 28.49 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 19 | NA |
| 138 | 28.56 | radiation | 10.0 | 1440 | < th | dose independent | sin | 16 | NA |
| 141 | 28.59 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 148 | 28.62 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 24 | 4 |
| 177 | 28.70 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 178 | 28.70 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 18 | 3 |
| 191 | 28.72 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 206 | 28.74 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 24 | 4 |
| 269 | 28.85 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 17 | 12 |
| 300 | 28.93 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 18 | 5 |
| 319 | 28.95 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 363 | 29.03 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 378 | 29.06 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 419 | 29.10 | humidity | 90.0 | 720 | > th | dose independent | rect. | 20 | 3 |
| 425 | 29.10 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 488 | 29.16 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 522 | 29.19 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 11 | 7 |
| 536 | 29.19 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 554 | 29.21 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 573 | 29.22 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 11 | 7 |
| 591 | 29.23 | humidity | 60.0 | 720 | > th | dose dependent | sin | 14 | NA |
| 636 | 29.27 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 748 | 29.35 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 11 | 21 |
| 761 | 29.37 | radiation | 1.0 | 1440 | > th | dose dependent | sin | 16 | NA |
| 778 | 29.38 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 810 | 29.40 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 882 | 29.43 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 11 | 10 |
| 884 | 29.43 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 11 | 15 |
| 893 | 29.44 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 9 | 6 |
| 904 | 29.44 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 11 | 12 |
| 948 | 29.46 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 2 | 15 |
| 964 | 29.47 | humidity | 90.0 | 1440 | < th | dose dependent | sin | 22 | NA |