BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0853600 Os03g0853600|J033082A21
         (337 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0853600  Conserved hypothetical protein                      123   2e-28

>Os03g0853600 Conserved hypothetical protein
          Length = 337

 Score =  123 bits (308), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/312 (30%), Positives = 95/312 (30%)

Query: 26  GGDXXXXXXXXXXXXXXXXXPGGTPAARHLASLQSRGRVLATXXXXXXXXXXXXXXXXXX 85
           GGD                 PGGTPAARHLASLQSRGRVLAT                  
Sbjct: 26  GGDALASYLGLSFAFFLASLPGGTPAARHLASLQSRGRVLATRLLAAEDQLRQLRARRRD 85

Query: 86  XXXXXXXXXXIFAGHRASWMDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 145
                     IFAGHRASWMDN                                      
Sbjct: 86  DARANARAAEIFAGHRASWMDNERRLLARATAATDEAASLRARLAEAEADAAALRARVDR 145

Query: 146 XXXXXXXXXXXINXXXXXXXXXXXXXXXXXXXPEPRDXXXXXXXXXXXXXXXXXXXXPXX 205
                      IN                   PEPRD                    P  
Sbjct: 146 LEREAAERDDLINALLAATRAADADLRSTDDDPEPRDAEQHHHHQPAAAALDLDPAEPRG 205

Query: 206 XXXXXXXXXXXXXXXXXXXXXXXXFGSDDFYTXXXXXXXSGMQQPWMERSKGWQVRRQKA 265
                                   FGSDDFYT       SGMQQPWMERSKGWQVRRQKA
Sbjct: 206 ADADAEALAAAAALYAQQRQQQEGFGSDDFYTAAAAAAASGMQQPWMERSKGWQVRRQKA 265

Query: 266 GIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYILLSSQEVVNXXXXXX 325
           GIH                                        YILLSSQEVVN      
Sbjct: 266 GIHPLSLPLTPSLFLLFSTNTLPSLTTTPTLPLTSNDLTPSSTYILLSSQEVVNLLVDCL 325

Query: 326 XXXXXMAATANG 337
                MAATANG
Sbjct: 326 MLILLMAATANG 337



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.132    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,185,592
Number of extensions: 42784
Number of successful extensions: 54
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 236
Effective length of database: 11,762,187
Effective search space: 2775876132
Effective search space used: 2775876132
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)