BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0849600 Os03g0849600|AK101862
         (754 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0849600  COG complex component, COG2 family protein         1419   0.0  

>Os03g0849600 COG complex component, COG2 family protein
          Length = 754

 Score = 1419 bits (3674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 697/754 (92%), Positives = 697/754 (92%)

Query: 1   MADLAVAAPPPTDLFGEPIEAHPPWFKPDSFLRPDFDPDAYVADLRSYVPLDSLAAELRS 60
           MADLAVAAPPPTDLFGEPIEAHPPWFKPDSFLRPDFDPDAYVADLRSYVPLDSLAAELRS
Sbjct: 1   MADLAVAAPPPTDLFGEPIEAHPPWFKPDSFLRPDFDPDAYVADLRSYVPLDSLAAELRS 60

Query: 61  HLASLRAELVGLINRDYADFVGLSARLKGVDAAAARMRPPLAELRDKVXXXXXXXXXXXX 120
           HLASLRAELVGLINRDYADFVGLSARLKGVDAAAARMRPPLAELRDKV            
Sbjct: 61  HLASLRAELVGLINRDYADFVGLSARLKGVDAAAARMRPPLAELRDKVASFRAAAAAGLA 120

Query: 121 XXXXXLEQXXXXXXXXXXXXXXXDTSHVVSKVEKLIKELPSAPSDSSNVEAVSGDKGYSG 180
                LEQ               DTSHVVSKVEKLIKELPSAPSDSSNVEAVSGDKGYSG
Sbjct: 121 ALRSGLEQRAAATAARELLELLLDTSHVVSKVEKLIKELPSAPSDSSNVEAVSGDKGYSG 180

Query: 181 NVATPPNMDDGTDVRETQSILLERIASEMNRLKFYISHAQNLPFIENMEKRAQGATKLLD 240
           NVATPPNMDDGTDVRETQSILLERIASEMNRLKFYISHAQNLPFIENMEKRAQGATKLLD
Sbjct: 181 NVATPPNMDDGTDVRETQSILLERIASEMNRLKFYISHAQNLPFIENMEKRAQGATKLLD 240

Query: 241 GSLERCFVDGLEHRDDKVIYNCLRAYAAIDNTSSAEEIFRTTVVSPLIQKIVPQNYAKVV 300
           GSLERCFVDGLEHRDDKVIYNCLRAYAAIDNTSSAEEIFRTTVVSPLIQKIVPQNYAKVV
Sbjct: 241 GSLERCFVDGLEHRDDKVIYNCLRAYAAIDNTSSAEEIFRTTVVSPLIQKIVPQNYAKVV 300

Query: 301 AGVSSDDLEDDYEQIMQCVEKDCKFILEISSLANSGLHVFDFLANSILKEVHLAIQKGKP 360
           AGVSSDDLEDDYEQIMQCVEKDCKFILEISSLANSGLHVFDFLANSILKEVHLAIQKGKP
Sbjct: 301 AGVSSDDLEDDYEQIMQCVEKDCKFILEISSLANSGLHVFDFLANSILKEVHLAIQKGKP 360

Query: 361 GATSPGKPKQFLKNYKASLRFLDFLEGYCSSKPAVTKFRSEPAYADFMRQWHVAVYFTLK 420
           GATSPGKPKQFLKNYKASLRFLDFLEGYCSSKPAVTKFRSEPAYADFMRQWHVAVYFTLK
Sbjct: 361 GATSPGKPKQFLKNYKASLRFLDFLEGYCSSKPAVTKFRSEPAYADFMRQWHVAVYFTLK 420

Query: 421 FQDIAGGLDSVLTATITPAGMHDNQAKPQTLLLKQSVKLLESLQACWSDDVLVFSHSDKF 480
           FQDIAGGLDSVLTATITPAGMHDNQAKPQTLLLKQSVKLLESLQACWSDDVLVFSHSDKF
Sbjct: 421 FQDIAGGLDSVLTATITPAGMHDNQAKPQTLLLKQSVKLLESLQACWSDDVLVFSHSDKF 480

Query: 481 LRLSLQLISRYTTWLSSGLAARKXXXXXXXXXXXXEWALSVPVEDFIYVMHDVNAVISEL 540
           LRLSLQLISRYTTWLSSGLAARK            EWALSVPVEDFIYVMHDVNAVISEL
Sbjct: 481 LRLSLQLISRYTTWLSSGLAARKASDGGSSSPADAEWALSVPVEDFIYVMHDVNAVISEL 540

Query: 541 LESGQFVEHVNQLLASCPTEVLALVKHSILQAVEPLKELLPAIMNVMIMVIVKRSNEDLK 600
           LESGQFVEHVNQLLASCPTEVLALVKHSILQAVEPLKELLPAIMNVMIMVIVKRSNEDLK
Sbjct: 541 LESGQFVEHVNQLLASCPTEVLALVKHSILQAVEPLKELLPAIMNVMIMVIVKRSNEDLK 600

Query: 601 HLKGITATYRMTNKLPVRHSPYVSGILHPLKVFLEGDRIHYLSEDDKAKLRRGSTDKITS 660
           HLKGITATYRMTNKLPVRHSPYVSGILHPLKVFLEGDRIHYLSEDDKAKLRRGSTDKITS
Sbjct: 601 HLKGITATYRMTNKLPVRHSPYVSGILHPLKVFLEGDRIHYLSEDDKAKLRRGSTDKITS 660

Query: 661 IYYDMVSEVVTVARKTESSLQRLRQGAQRRVGAXXXXXXXXXXXXXKICMQLFLDIQEYA 720
           IYYDMVSEVVTVARKTESSLQRLRQGAQRRVGA             KICMQLFLDIQEYA
Sbjct: 661 IYYDMVSEVVTVARKTESSLQRLRQGAQRRVGANTDTSDNIISDTDKICMQLFLDIQEYA 720

Query: 721 RNLRAIGIDAREIETFRALWQCVAPRDKQDNIQF 754
           RNLRAIGIDAREIETFRALWQCVAPRDKQDNIQF
Sbjct: 721 RNLRAIGIDAREIETFRALWQCVAPRDKQDNIQF 754



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.134    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 22,606,511
Number of extensions: 859930
Number of successful extensions: 2088
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2089
Number of HSP's successfully gapped: 1
Length of query: 754
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 646
Effective length of database: 11,396,689
Effective search space: 7362261094
Effective search space used: 7362261094
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 160 (66.2 bits)