Os03g0849600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : COG complex component, COG2 family protein.
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Os03g0849600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : COG complex component, COG2 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.04 | 0.329 | 10.9 | -0.509 | 0.261 | 0.734 | 0.145 | -0.48 | -0.121 | 17.2 | 26.29 | 4690 | -- | -- |
| 49.1 | 0.326 | 10.8 | -0.397 | 0.27 | 0.682 | 0.154 | -- | -0.0997 | 17.2 | 26.3 | 4691 | -- | -- |
| 49.09 | 0.326 | 10.9 | -0.508 | 0.262 | 0.734 | -- | -0.474 | -0.122 | 17.2 | 26.27 | 4692 | -- | -- |
| 49.15 | 0.327 | 10.8 | -0.393 | 0.265 | 0.683 | -- | -- | -0.0998 | 17.2 | 26.29 | 4692 | -- | -- |
| 52.46 | 0.337 | 10.9 | -0.586 | -- | 0.779 | -- | -0.748 | -0.144 | -- | 26.2 | 4798 | -- | -- |
| 65.2 | 0.379 | 10.8 | -0.172 | 0.281 | -- | 0.14 | -- | -0.0994 | 17.7 | -- | -- | -- | -- |
| 65.25 | 0.378 | 10.8 | -0.173 | 0.282 | -- | -- | -- | -0.0988 | 17.6 | -- | -- | -- | -- |
| 52.6 | 0.338 | 10.8 | -0.408 | -- | 0.7 | -- | -- | -0.109 | -- | 26.25 | 4799 | -- | -- |
| 52.85 | 0.339 | 10.8 | -- | 0.276 | 0.591 | -- | -- | -0.042 | 17.1 | 26.9 | 4691 | -- | -- |
| 69.38 | 0.389 | 10.8 | -0.182 | -- | -- | -- | -- | -0.106 | -- | -- | -- | -- | -- |
| 66.04 | 0.38 | 10.8 | -- | 0.285 | -- | -- | -- | -0.0796 | 17.6 | -- | -- | -- | -- |
| 56.58 | 0.35 | 10.8 | -- | -- | 0.601 | -- | -- | -0.0528 | -- | 26.8 | 4801 | -- | -- |
| 70.26 | 0.391 | 10.8 | -- | -- | -- | -- | -- | -0.0854 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.51 | humidity | 80 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 2 | 46.63 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 3 | 46.68 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 4 |
| 15 | 46.73 | humidity | 70 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 17 | 46.81 | humidity | 80 | 14400 | > th | dose dependent | rect. | 18 | 4 |
| 21 | 46.93 | humidity | 60 | 14400 | < th | dose dependent | rect. | 17 | 16 |
| 24 | 47.06 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 15 |
| 25 | 47.09 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 13 |
| 26 | 47.10 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 5 |
| 31 | 47.11 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 9 |
| 42 | 47.30 | humidity | 80 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 47 | 47.40 | humidity | 80 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 48 | 47.40 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 51 | 47.43 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 14 |
| 52 | 47.44 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 53 | 47.45 | humidity | 80 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 60 | 47.53 | humidity | 60 | 14400 | < th | dose dependent | rect. | 17 | 3 |
| 74 | 47.57 | radiation | 20 | 4320 | > th | dose independent | rect. | 16 | 16 |
| 75 | 47.61 | temperature | 20 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 78 | 47.65 | temperature | 10 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 82 | 47.72 | radiation | 20 | 4320 | > th | dose dependent | rect. | 15 | 17 |
| 94 | 47.80 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 104 | 47.89 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 108 | 47.93 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 110 | 47.94 | atmosphere | 1000 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 111 | 47.95 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 119 | 48.00 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 121 | 48.01 | humidity | 90 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 146 | 48.08 | atmosphere | 1000 | 43200 | < th | dose dependent | rect. | 11 | 4 |
| 185 | 48.20 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 10 |
| 186 | 48.20 | humidity | 50 | 14400 | < th | dose dependent | rect. | 16 | 19 |
| 209 | 48.23 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 230 | 48.27 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 298 | 48.45 | humidity | 90 | 14400 | < th | dose independent | rect. | 18 | 5 |
| 338 | 48.55 | humidity | 50 | 14400 | > th | dose independent | rect. | 17 | 17 |
| 344 | 48.56 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 380 | 48.63 | wind | 3 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 431 | 48.73 | temperature | 10 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 488 | 48.82 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 5 |
| 523 | 48.86 | humidity | 50 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 535 | 48.89 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 543 | 48.90 | temperature | 30 | 4320 | < th | dose independent | rect. | 2 | 8 |
| 545 | 48.90 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 10 |
| 546 | 48.90 | temperature | 10 | 4320 | > th | dose dependent | sin | 22 | NA |
| 556 | 48.91 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 6 |
| 571 | 48.93 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 2 |
| 651 | 49.00 | humidity | 50 | 14400 | < th | dose independent | rect. | 16 | 19 |
| 689 | 49.05 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 3 |
| 750 | 49.10 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 22 |
| 777 | 49.11 | radiation | 20 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 823 | 49.14 | radiation | 20 | 4320 | < th | dose independent | rect. | 16 | 2 |
| 826 | 49.14 | radiation | 20 | 4320 | < th | dose independent | rect. | 16 | 5 |
| 833 | 49.14 | radiation | 20 | 4320 | < th | dose independent | rect. | 16 | 10 |
| 861 | 49.15 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 11 |
| 872 | 49.15 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 22 |
| 914 | 49.18 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 8 |
| 957 | 49.22 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 983 | 49.25 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 8 |