BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0845300 Os03g0845300|016-094-A05
         (369 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0845300  Hyaluronan/mRNA binding protein family protein      217   9e-57

>Os03g0845300 Hyaluronan/mRNA binding protein family protein
          Length = 369

 Score =  217 bits (553), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 122/144 (84%), Positives = 122/144 (84%)

Query: 1   DMTLEEYEKVLEEKRKALEDSKSEGRKVTAEVFEGMQLLEKKKLDDENASKKAENEQRKE 60
           DMTLEEYEKVLEEKRKALEDSKSEGRKVTAEVFEGMQLLEKKKLDDENASKKAENEQRKE
Sbjct: 1   DMTLEEYEKVLEEKRKALEDSKSEGRKVTAEVFEGMQLLEKKKLDDENASKKAENEQRKE 60

Query: 61  PAKQVKAPKAINLNDLLKPADGQAYRPRPPPRRVQEDXXXXXXXXXXXXXXXXXXXXXXN 120
           PAKQVKAPKAINLNDLLKPADGQAYRPRPPPRRVQED                      N
Sbjct: 61  PAKQVKAPKAINLNDLLKPADGQAYRPRPPPRRVQEDGFSQGYYNGGGGPGRGNGGFRQN 120

Query: 121 SRDHSAEPHGNARGNGGYQERRDI 144
           SRDHSAEPHGNARGNGGYQERRDI
Sbjct: 121 SRDHSAEPHGNARGNGGYQERRDI 144



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.306    0.126    0.344 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,969,572
Number of extensions: 192790
Number of successful extensions: 810
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 807
Number of HSP's successfully gapped: 5
Length of query: 369
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 267
Effective length of database: 11,709,973
Effective search space: 3126562791
Effective search space used: 3126562791
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 157 (65.1 bits)