BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0839100 Os03g0839100|AK109847
(511 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0839100 Ubiquinone biosynthesis monooxygenase, COQ6-ty... 1061 0.0
AK110190 142 7e-34
>Os03g0839100 Ubiquinone biosynthesis monooxygenase, COQ6-type family protein
Length = 511
Score = 1061 bits (2744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 511/511 (100%), Positives = 511/511 (100%)
Query: 1 KLANQTRRRHTGFSTGRELSAVADDAAAGVPSSQDHTEKVDDVKARPDELDIAIVGGGMV 60
KLANQTRRRHTGFSTGRELSAVADDAAAGVPSSQDHTEKVDDVKARPDELDIAIVGGGMV
Sbjct: 1 KLANQTRRRHTGFSTGRELSAVADDAAAGVPSSQDHTEKVDDVKARPDELDIAIVGGGMV 60
Query: 61 GLAVACALSNMPLTKHLRVGIIDSNPALKSRNYLKKDGVPDSRVSTITPATISFFRDIGA 120
GLAVACALSNMPLTKHLRVGIIDSNPALKSRNYLKKDGVPDSRVSTITPATISFFRDIGA
Sbjct: 61 GLAVACALSNMPLTKHLRVGIIDSNPALKSRNYLKKDGVPDSRVSTITPATISFFRDIGA 120
Query: 121 WDHVQQQRHAFFGKMQVWDYTGLGYTRYSARDVGKEYLGCVVENKVLCNSLLLRLQEENG 180
WDHVQQQRHAFFGKMQVWDYTGLGYTRYSARDVGKEYLGCVVENKVLCNSLLLRLQEENG
Sbjct: 121 WDHVQQQRHAFFGKMQVWDYTGLGYTRYSARDVGKEYLGCVVENKVLCNSLLLRLQEENG 180
Query: 181 DIEKMIYPTRLISLALPSKSRQAPTREAISSGYPPEELNRSNLVKLELSDGQTLYSKLVV 240
DIEKMIYPTRLISLALPSKSRQAPTREAISSGYPPEELNRSNLVKLELSDGQTLYSKLVV
Sbjct: 181 DIEKMIYPTRLISLALPSKSRQAPTREAISSGYPPEELNRSNLVKLELSDGQTLYSKLVV 240
Query: 241 GADGSKSNVRQTAGIKTTGWNYPQSAIICTVEHITENDCAWQRFLPSGPIALLPIGDNYS 300
GADGSKSNVRQTAGIKTTGWNYPQSAIICTVEHITENDCAWQRFLPSGPIALLPIGDNYS
Sbjct: 241 GADGSKSNVRQTAGIKTTGWNYPQSAIICTVEHITENDCAWQRFLPSGPIALLPIGDNYS 300
Query: 301 NIVWTMSPEESLRHKSMSPEDFVKSVNNALDFGYGPHPHSGSLDYYMEKLFSDIGSTAAS 360
NIVWTMSPEESLRHKSMSPEDFVKSVNNALDFGYGPHPHSGSLDYYMEKLFSDIGSTAAS
Sbjct: 301 NIVWTMSPEESLRHKSMSPEDFVKSVNNALDFGYGPHPHSGSLDYYMEKLFSDIGSTAAS 360
Query: 361 TKECFEVPPKAIGVVCERMAFPLSLKHSHDYISKRLALVGDAAHTVHPLAGQGVNLGFGD 420
TKECFEVPPKAIGVVCERMAFPLSLKHSHDYISKRLALVGDAAHTVHPLAGQGVNLGFGD
Sbjct: 361 TKECFEVPPKAIGVVCERMAFPLSLKHSHDYISKRLALVGDAAHTVHPLAGQGVNLGFGD 420
Query: 421 AAALAKVIAEGVSVGADFGDISLLKRYENNRKAANVAMAALLDGFQKMYSVDFGPLNVLR 480
AAALAKVIAEGVSVGADFGDISLLKRYENNRKAANVAMAALLDGFQKMYSVDFGPLNVLR
Sbjct: 421 AAALAKVIAEGVSVGADFGDISLLKRYENNRKAANVAMAALLDGFQKMYSVDFGPLNVLR 480
Query: 481 AAAFHGAQYISPLKKNIISYAMGDAKWPLFS 511
AAAFHGAQYISPLKKNIISYAMGDAKWPLFS
Sbjct: 481 AAAFHGAQYISPLKKNIISYAMGDAKWPLFS 511
>AK110190
Length = 902
Score = 142 bits (358), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 130/517 (25%), Positives = 213/517 (41%), Gaps = 107/517 (20%)
Query: 51 DIAIVGGGMVGLAVAC------ALSNMPLTKHLRVGIIDSNPALKSRNYLKKDGVP---- 100
DI IVG G+VGL +AC A+ + + II+++ + R++
Sbjct: 91 DIVIVGAGVVGLGLACDLVASGAVGDPAAHAAAPITIIEASDLARLRSWTADRAAYLASH 150
Query: 101 ------------DSRVSTITPATISFFRDIGAWDHVQQQRHAFFGKMQVWDYTGLGYTRY 148
++RV ++T +++ R IG + ++ + R M+VWD +
Sbjct: 151 PSTSSSSDTLDWENRVISLTADNLAWLRRIGVYPYLVEHRLRPVSAMRVWDGLSGALLDF 210
Query: 149 SARDV---GKEYLGCVVENKVLCNSLLLRLQEENGDIEKMIYPTRLISLALPSKSRQAPT 205
+ D+ + +VE L ++L L++ G + + LP +A +
Sbjct: 211 DSADLEPGAASQISAMVEISNLQQAMLRFLEQGPGKDAVSVQDGVKVDAILPGSKVEAGS 270
Query: 206 REAISSGYPPEELNRSNLVKLELSDGQTLYSKLVVGADGSKSNVRQTAGIKTTGWNYPQS 265
+P + LS G+++ ++L+VGADG S VR+ AGI GW Y +
Sbjct: 271 AVGEKDPWP----------VVGLSSGESVRARLLVGADGPNSPVRRYAGIGDYGWAYNRK 320
Query: 266 AIICTVE-HITEND------CAWQRFLPSGPIALLPIGDNYSNIVWTMSPEE----SLRH 314
++ T+ H E A+QRFLPSG IA LP+ D+ +++VWT+ P+ ++ H
Sbjct: 321 GLVGTLRCHGAEAGEPPVGYTAYQRFLPSGTIAFLPLSDSTASMVWTLEPQVAAVLTMLH 380
Query: 315 KSM---SPEDFVKSVNNALDF-------------GYGPHPHSGSLDYYMEKLFSDIGSTA 358
+ S E + V+ A Y HP + L + I A
Sbjct: 381 RDTAGSSHEPLARLVDAAFRLPWAHIERLFERVVAYTTHPLPEGIGRDWSWLSAGIPDEA 440
Query: 359 ASTKECF----------EVPPKAIGVVCERMA-FPLSLKHSHDYISKRL----------- 396
+ +VPPK + + +A FPL+LKH+ Y+ L
Sbjct: 441 QWVERALGEPLVESSTGDVPPKIASLDAKSVASFPLNLKHADAYLGASLNGASLLPSGLL 500
Query: 397 -----------------------ALVGDAAHTVHPLAGQGVNLGFGDAAALAKVIAEGVS 433
LVGDAAHT+HPLAGQG+NLG D +L+ + +
Sbjct: 501 AGAMAAVGLAPQGAGQGAGRGRTVLVGDAAHTIHPLAGQGLNLGIADVRSLSATLRSAMQ 560
Query: 434 VGADFGDISLLKRYENNRKAANVAMAALLDGFQKMYS 470
G D G + LK Y R N M + +D +Y+
Sbjct: 561 SGQDVGSYNALKPYARERYWENQKMLSAVDHLHWLYA 597
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.134 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,428,006
Number of extensions: 797462
Number of successful extensions: 2073
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2071
Number of HSP's successfully gapped: 3
Length of query: 511
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 406
Effective length of database: 11,553,331
Effective search space: 4690652386
Effective search space used: 4690652386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)