BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0839000 Os03g0839000|AK070115
         (191 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0839000  Zinc finger, RING-type domain containing protein    322   8e-89

>Os03g0839000 Zinc finger, RING-type domain containing protein
          Length = 191

 Score =  322 bits (826), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 167/191 (87%), Positives = 167/191 (87%)

Query: 1   MSSSSASAVPPEDDVCSVCHDRFRIPCQANCSHWFCGECIIRVWNHGPSVQPCKCPICRR 60
           MSSSSASAVPPEDDVCSVCHDRFRIPCQANCSHWFCGECIIRVWNHGPSVQPCKCPICRR
Sbjct: 1   MSSSSASAVPPEDDVCSVCHDRFRIPCQANCSHWFCGECIIRVWNHGPSVQPCKCPICRR 60

Query: 61  LINLLVPANVSIDNDDDPQIQHVLGEVQHYNRIFGGTPRNLTQRLQDLPFFIRRLFRELL 120
           LINLLVPANVSIDNDDDPQIQHVLGEVQHYNRIFGGTPRNLTQRLQDLPFFIRRLFRELL
Sbjct: 61  LINLLVPANVSIDNDDDPQIQHVLGEVQHYNRIFGGTPRNLTQRLQDLPFFIRRLFRELL 120

Query: 121 DPQRTLPLVFRARMVMMVALSAIYVLSPIDILPENXXXXXXXXXXXXXXXXXXXXXXXXY 180
           DPQRTLPLVFRARMVMMVALSAIYVLSPIDILPEN                        Y
Sbjct: 121 DPQRTLPLVFRARMVMMVALSAIYVLSPIDILPENVLGLFGFFDDFLVLLIVFLHLAAVY 180

Query: 181 RSLLLYRHGGH 191
           RSLLLYRHGGH
Sbjct: 181 RSLLLYRHGGH 191



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.329    0.143    0.474 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,525,760
Number of extensions: 261889
Number of successful extensions: 876
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 875
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 96
Effective length of database: 12,075,471
Effective search space: 1159245216
Effective search space used: 1159245216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 153 (63.5 bits)