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Os03g0839000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.2 (0.0167) R2 : 0.439
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.633 (0.0405) R2dC : 0.3 R2C : 0.27
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.363 (0.0352) R2dN8 : 0.169 R2N8 : 0.139
σ : 0.316
deviance : 45.5
__
_____
C
peak time of C : 1.77
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
24.69 0.233 12.2 0.834 0.667 -0.308 0.229 -0.601 0.388 1.68 58 1250 -- --
25.08 0.233 12.2 0.873 0.669 -0.361 0.21 -- 0.39 1.58 57 1125 -- --
24.89 0.232 12.2 0.827 0.667 -0.304 -- -0.571 0.388 1.71 57 1254 -- --
25.01 0.233 12.2 0.839 0.685 -0.364 -- -- 0.369 1.4 63 1057 -- --
46.89 0.321 12.1 0.818 -- -0.319 -- -0.549 0.425 -- 63 4684 -- --
29.18 0.253 12.1 0.789 0.618 -- 0.107 -- 0.451 1.71 -- -- -- --
29.22 0.253 12.1 0.786 0.618 -- -- -- 0.451 1.73 -- -- -- --
32.83 0.268 12.1 0.846 -- -0.44 -- -- 0.469 -- 73 1670 -- --
33.92 0.271 12.2 -- 0.707 -0.755 -- -- 0.348 1.46 64 26980 -- --
52.48 0.338 12.1 0.811 -- -- -- -- 0.465 -- -- -- -- --
45.5 0.316 12.2 -- 0.633 -- -- -- 0.363 1.77 -- -- -- --
51.7 0.336 12.2 -- -- -0.423 -- -- 0.375 -- 73 1699 -- --
69.83 0.39 12.2 -- -- -- -- -- 0.375 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 23.29 precipitation 1e-01 14400 < th dose independent rect. 17 1
2 23.29 precipitation 1e-01 14400 < th dose dependent rect. 17 1
3 23.29 precipitation 1e-01 14400 > th dose dependent rect. 17 2
5 23.35 precipitation 1e-01 14400 > th dose independent rect. 17 1
6 23.39 humidity 7e+01 1440 > th dose independent rect. 17 1
10 23.49 precipitation 1e-01 14400 > th dose dependent rect. 6 12
12 23.52 precipitation 1e-01 14400 > th dose dependent rect. 8 10
16 23.58 precipitation 1e-01 4320 < th dose independent rect. 14 4
17 23.58 precipitation 1e-01 4320 < th dose dependent rect. 14 4
20 23.61 precipitation 1e-01 4320 > th dose independent rect. 14 4
24 23.64 precipitation 1e-01 4320 < th dose independent rect. 9 9
27 23.64 precipitation 1e-01 4320 < th dose dependent rect. 9 9
31 23.66 precipitation 1e-01 4320 > th dose independent rect. 12 6
35 23.67 precipitation 1e-01 4320 > th dose independent rect. 9 9
40 23.68 precipitation 1e-01 4320 < th dose independent rect. 6 12
42 23.68 precipitation 1e-01 4320 < th dose dependent rect. 6 12
45 23.70 precipitation 1e-01 4320 > th dose independent rect. 6 12
145 24.18 wind 9e+00 14400 > th dose dependent rect. 17 18
157 24.23 wind 9e+00 14400 > th dose independent rect. 20 1
161 24.24 wind 9e+00 14400 > th dose dependent rect. 20 1
169 24.25 wind 9e+00 14400 > th dose dependent rect. 17 4
173 24.25 precipitation 1e-01 14400 > th dose dependent rect. 6 16
180 24.27 precipitation 1e-01 14400 > th dose dependent rect. 8 14
185 24.28 wind 9e+00 14400 > th dose dependent rect. 17 11
192 24.30 humidity 7e+01 1440 < th dose independent rect. 17 1
208 24.33 precipitation 1e-01 4320 > th dose dependent rect. 1 17
209 24.34 precipitation 1e-01 14400 > th dose dependent sin 21 NA
225 24.37 wind 9e+00 14400 < th dose independent rect. 20 1
325 24.52 humidity 5e+01 720 > th dose dependent rect. 9 12
327 24.53 atmosphere 1e+03 14400 < th dose independent rect. 12 1
347 24.55 atmosphere 1e+03 14400 > th dose independent rect. 12 1
351 24.55 humidity 7e+01 1440 > th dose independent rect. 16 16
360 24.56 wind 9e+00 14400 > th dose independent rect. 17 18
374 24.57 precipitation 1e-01 14400 > th dose dependent rect. 20 22
375 24.58 wind 9e+00 14400 < th dose independent rect. 20 15
377 24.58 humidity 8e+01 1440 < th dose dependent rect. 10 10
378 24.58 wind 9e+00 14400 > th dose dependent rect. 20 15
380 24.59 humidity 7e+01 1440 > th dose independent rect. 16 8
398 24.60 humidity 7e+01 1440 > th dose independent rect. 16 12
403 24.60 wind 9e+00 14400 < th dose independent rect. 18 17
447 24.64 wind 9e+00 14400 < th dose independent rect. 20 7
448 24.64 wind 9e+00 14400 > th dose independent rect. 20 15
458 24.65 humidity 6e+01 720 > th dose independent rect. 9 12
459 24.65 humidity 8e+01 1440 < th dose dependent sin 19 NA
505 24.67 humidity 6e+01 1440 > th dose dependent rect. 17 2
600 24.72 precipitation 1e-01 43200 > th dose dependent rect. 19 2
640 24.74 radiation 1e+01 43200 > th dose independent rect. 12 1
663 24.74 humidity 8e+01 1440 < th dose dependent rect. 15 23
664 24.75 humidity 7e+01 1440 > th dose independent sin 14 NA
668 24.75 humidity 8e+01 1440 < th dose dependent rect. 15 5
723 24.77 humidity 9e+01 1440 < th dose dependent rect. 17 2
789 24.79 humidity 8e+01 1440 < th dose dependent no NA NA
857 24.82 wind 9e+00 14400 > th dose dependent sin 11 NA
870 24.83 humidity 8e+01 4320 < th dose independent rect. 19 1
878 24.83 radiation 1e+00 43200 < th dose dependent rect. 24 2
905 24.84 precipitation 1e-01 14400 > th dose independent rect. 6 16
906 24.84 precipitation 1e-01 14400 < th dose independent rect. 6 16
918 24.84 precipitation 1e-01 14400 < th dose dependent rect. 6 16
955 24.86 humidity 8e+01 1440 > th dose independent rect. 8 13
978 24.87 precipitation 1e-01 14400 > th dose independent rect. 8 14
979 24.87 precipitation 1e-01 14400 < th dose independent rect. 8 14
988 24.87 precipitation 1e-01 14400 < th dose dependent rect. 8 14