BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0835400 Os03g0835400|AK061773
         (358 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0835400  Similar to Uvs101                                   590   e-169

>Os03g0835400 Similar to Uvs101
          Length = 358

 Score =  590 bits (1521), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 298/346 (86%), Positives = 298/346 (86%)

Query: 1   MAAMVVXXXXXXXXXXXXSSRSFARSLPRPVSTLVVAEHEGGFVKPXXXXXXXXXXXIGK 60
           MAAMVV            SSRSFARSLPRPVSTLVVAEHEGGFVKP           IGK
Sbjct: 1   MAAMVVGALRRGTATAGGSSRSFARSLPRPVSTLVVAEHEGGFVKPSSLSALAAAEAIGK 60

Query: 61  DDNRVXXXXXXXXXXXHKAAEHAASSHPLVSEVLVADSDVFAHPLAEPWAELLRSVQHKG 120
           DDNRV           HKAAEHAASSHPLVSEVLVADSDVFAHPLAEPWAELLRSVQHKG
Sbjct: 61  DDNRVSLLLGGSGPGLHKAAEHAASSHPLVSEVLVADSDVFAHPLAEPWAELLRSVQHKG 120

Query: 121 GYSHVIASSTSFGKNLLPRAAALLDVSPVTDVTSISEPRVFVRPIYAGNALCTVRYTGED 180
           GYSHVIASSTSFGKNLLPRAAALLDVSPVTDVTSISEPRVFVRPIYAGNALCTVRYTGED
Sbjct: 121 GYSHVIASSTSFGKNLLPRAAALLDVSPVTDVTSISEPRVFVRPIYAGNALCTVRYTGED 180

Query: 181 PCMMSIRSTSFSPTEAMSEAKVAPITQVDLSFLSEGSSGKSAWVNLKSQDTERPDLANAP 240
           PCMMSIRSTSFSPTEAMSEAKVAPITQVDLSFLSEGSSGKSAWVNLKSQDTERPDLANAP
Sbjct: 181 PCMMSIRSTSFSPTEAMSEAKVAPITQVDLSFLSEGSSGKSAWVNLKSQDTERPDLANAP 240

Query: 241 VVVTGGRGLKSAENFKVLEQLAEKLXXXXXXXXXXXXXXFVPNELQVGQTGKIVAPELYM 300
           VVVTGGRGLKSAENFKVLEQLAEKL              FVPNELQVGQTGKIVAPELYM
Sbjct: 241 VVVTGGRGLKSAENFKVLEQLAEKLGAAVGATRAAVDAGFVPNELQVGQTGKIVAPELYM 300

Query: 301 AFGVSGAIQHLAGMRDSKVIVAVNKDADAPIFQVADYGIVADLFEV 346
           AFGVSGAIQHLAGMRDSKVIVAVNKDADAPIFQVADYGIVADLFEV
Sbjct: 301 AFGVSGAIQHLAGMRDSKVIVAVNKDADAPIFQVADYGIVADLFEV 346



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.130    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,514,078
Number of extensions: 341617
Number of successful extensions: 741
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 741
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 256
Effective length of database: 11,709,973
Effective search space: 2997753088
Effective search space used: 2997753088
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)