Os03g0835400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Uvs101.
FiT-DB / Search/ Help/ Sample detail
|
Os03g0835400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Uvs101.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.19 | 0.262 | 10 | -1.23 | 0.525 | 1.83 | -0.399 | 5.86 | -0.267 | 2.79 | 0.4803 | 1446 | -- | -- |
| 39.97 | 0.294 | 9.94 | -0.719 | 0.572 | 0.515 | -0.166 | -- | -0.0968 | 2.09 | 8.355 | 1367 | -- | -- |
| 31.31 | 0.261 | 10 | -1.22 | 0.593 | 1.87 | -- | 5.91 | -0.263 | 2.35 | 0.4638 | 1425 | -- | -- |
| 37.57 | 0.285 | 9.94 | -0.705 | 0.588 | 0.527 | -- | -- | -0.118 | 2.17 | 56.58 | 1322 | -- | -- |
| 45.57 | 0.314 | 10 | -1.24 | -- | 1.75 | -- | 5.68 | -0.246 | -- | 0.3703 | 2987 | -- | -- |
| 46.07 | 0.318 | 9.97 | -0.79 | 0.507 | -- | -0.452 | -- | -0.248 | 2.67 | -- | -- | -- | -- |
| 46.78 | 0.32 | 9.97 | -0.779 | 0.506 | -- | -- | -- | -0.245 | 2.66 | -- | -- | -- | -- |
| 41.83 | 0.301 | 9.93 | -0.667 | -- | 1.08 | -- | -- | -0.0845 | -- | 3.993 | 3216 | -- | -- |
| 50.23 | 0.33 | 9.92 | -- | 0.587 | 0.564 | -- | -- | -0.0408 | 1.8 | 55.21 | 1262 | -- | -- |
| 61.7 | 0.367 | 9.96 | -0.757 | -- | -- | -- | -- | -0.232 | -- | -- | -- | -- | -- |
| 62.77 | 0.371 | 9.95 | -- | 0.49 | -- | -- | -- | -0.158 | 2.64 | -- | -- | -- | -- |
| 52.7 | 0.338 | 9.93 | -- | -- | 1.24 | -- | -- | -0.0179 | -- | 2.86 | 3203 | -- | -- |
| 76.84 | 0.409 | 9.95 | -- | -- | -- | -- | -- | -0.148 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.51 | wind | 1 | 43200 | < th | dose dependent | rect. | 18 | 12 |
| 2 | 29.82 | temperature | 25 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 4 | 29.93 | radiation | 1 | 14400 | < th | dose dependent | rect. | 20 | 9 |
| 5 | 29.95 | radiation | 1 | 14400 | < th | dose dependent | rect. | 22 | 7 |
| 8 | 30.00 | radiation | 1 | 14400 | < th | dose dependent | rect. | 24 | 5 |
| 10 | 30.02 | temperature | 25 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 12 | 30.10 | wind | 1 | 43200 | < th | dose dependent | rect. | 20 | 10 |
| 14 | 30.16 | temperature | 20 | 14400 | < th | dose independent | rect. | 4 | 17 |
| 16 | 30.17 | temperature | 20 | 14400 | < th | dose independent | rect. | 4 | 21 |
| 19 | 30.21 | temperature | 20 | 14400 | < th | dose independent | rect. | 24 | 22 |
| 28 | 30.25 | temperature | 20 | 14400 | < th | dose independent | rect. | 7 | 23 |
| 37 | 30.29 | temperature | 20 | 14400 | > th | dose independent | rect. | 4 | 17 |
| 41 | 30.30 | temperature | 20 | 14400 | > th | dose independent | rect. | 24 | 22 |
| 46 | 30.31 | temperature | 20 | 14400 | > th | dose independent | rect. | 4 | 22 |
| 50 | 30.32 | temperature | 20 | 14400 | < th | dose independent | no | NA | NA |
| 59 | 30.33 | temperature | 20 | 14400 | < th | dose independent | rect. | 10 | 23 |
| 63 | 30.33 | temperature | 20 | 14400 | < th | dose independent | rect. | 16 | 23 |
| 82 | 30.35 | temperature | 20 | 14400 | > th | dose independent | rect. | 7 | 23 |
| 110 | 30.39 | temperature | 20 | 14400 | > th | dose independent | no | NA | NA |
| 120 | 30.39 | temperature | 20 | 14400 | > th | dose independent | rect. | 11 | 23 |
| 122 | 30.39 | temperature | 20 | 14400 | > th | dose independent | rect. | 20 | 23 |
| 221 | 30.47 | temperature | 25 | 14400 | < th | dose dependent | rect. | 5 | 10 |
| 256 | 30.51 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 334 | 30.61 | temperature | 20 | 14400 | < th | dose independent | sin | 14 | NA |
| 396 | 30.70 | temperature | 20 | 14400 | > th | dose independent | sin | 10 | NA |
| 429 | 30.73 | temperature | 25 | 14400 | < th | dose dependent | sin | 1 | NA |
| 435 | 30.74 | temperature | 30 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 443 | 30.76 | temperature | 20 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 450 | 30.76 | temperature | 20 | 14400 | < th | dose dependent | rect. | 19 | 6 |
| 488 | 30.82 | temperature | 20 | 14400 | > th | dose independent | rect. | 4 | 6 |
| 512 | 30.85 | temperature | 20 | 14400 | > th | dose independent | sin | 2 | NA |
| 520 | 30.85 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 537 | 30.88 | temperature | 20 | 14400 | > th | dose independent | rect. | 4 | 12 |
| 613 | 30.97 | temperature | 20 | 14400 | < th | dose independent | sin | 23 | NA |
| 654 | 31.01 | wind | 1 | 43200 | < th | dose independent | rect. | 22 | 6 |
| 655 | 31.01 | temperature | 20 | 14400 | < th | dose independent | rect. | 4 | 6 |
| 680 | 31.04 | temperature | 20 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 690 | 31.05 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 11 |
| 696 | 31.06 | temperature | 20 | 14400 | < th | dose independent | rect. | 4 | 12 |
| 715 | 31.08 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 6 |
| 753 | 31.12 | wind | 1 | 43200 | < th | dose independent | rect. | 20 | 9 |
| 798 | 31.16 | wind | 7 | 43200 | > th | dose dependent | rect. | 11 | 2 |
| 850 | 31.22 | temperature | 25 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 872 | 31.24 | radiation | 10 | 43200 | < th | dose independent | rect. | 17 | 12 |
| 893 | 31.27 | radiation | 10 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 916 | 31.28 | temperature | 20 | 14400 | < th | dose dependent | sin | 17 | NA |
| 991 | 31.34 | temperature | 25 | 14400 | < th | dose dependent | no | NA | NA |