BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0816000 Os03g0816000|J065083N03
         (360 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0816000  Conserved hypothetical protein                      572   e-163

>Os03g0816000 Conserved hypothetical protein
          Length = 360

 Score =  572 bits (1473), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 284/360 (78%), Positives = 284/360 (78%)

Query: 1   MASPPPGAHRXXXXXXXXXXXXXXXXXXXXXXXXXXXLRQQPHPXXXXXXXXXXXXXXXX 60
           MASPPPGAHR                           LRQQPHP                
Sbjct: 1   MASPPPGAHRAASSSGALAPAAFPAASHFASRAAAPFLRQQPHPGGGGDSDGDNAVEEVD 60

Query: 61  XXXXXXXXXXXXXXXXXXXPCSSQQRCASTPXXXXXXXXXXXXXXQIEEEQQWQHSHIYN 120
                              PCSSQQRCASTP              QIEEEQQWQHSHIYN
Sbjct: 61  EGDDDEDDEEEEAELADGAPCSSQQRCASTPGIGRAGMNRGNGMRQIEEEQQWQHSHIYN 120

Query: 121 CGNEQYGHASSREDEPSTIPREMRVENGYGVIGRREGGPASSYWDLLRAHLSDPLTWVSP 180
           CGNEQYGHASSREDEPSTIPREMRVENGYGVIGRREGGPASSYWDLLRAHLSDPLTWVSP
Sbjct: 121 CGNEQYGHASSREDEPSTIPREMRVENGYGVIGRREGGPASSYWDLLRAHLSDPLTWVSP 180

Query: 181 NDCCSLGKGILMDDAMILSCGHSYGSNGMQHIYRMKACGKCGQPITEDSIRPNLALRLAV 240
           NDCCSLGKGILMDDAMILSCGHSYGSNGMQHIYRMKACGKCGQPITEDSIRPNLALRLAV
Sbjct: 181 NDCCSLGKGILMDDAMILSCGHSYGSNGMQHIYRMKACGKCGQPITEDSIRPNLALRLAV 240

Query: 241 QAFKREEESAKSLKRRRERLEQDKCGNDEPNPTEISRGKGVQFPFAVFDRVIIKGNKRTP 300
           QAFKREEESAKSLKRRRERLEQDKCGNDEPNPTEISRGKGVQFPFAVFDRVIIKGNKRTP
Sbjct: 241 QAFKREEESAKSLKRRRERLEQDKCGNDEPNPTEISRGKGVQFPFAVFDRVIIKGNKRTP 300

Query: 301 ERFVGRVAVVTAQCLNGWYVVKTLDNAESVKLQYRSLAKFTDGGQSSAMVANNAQNANWL 360
           ERFVGRVAVVTAQCLNGWYVVKTLDNAESVKLQYRSLAKFTDGGQSSAMVANNAQNANWL
Sbjct: 301 ERFVGRVAVVTAQCLNGWYVVKTLDNAESVKLQYRSLAKFTDGGQSSAMVANNAQNANWL 360



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.132    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,277,329
Number of extensions: 460958
Number of successful extensions: 1149
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1147
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 258
Effective length of database: 11,709,973
Effective search space: 3021173034
Effective search space used: 3021173034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)