Os03g0816000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0816000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.3 | 0.34 | 9.25 | -1.25 | 0.731 | -0.952 | 0.69 | -0.14 | -0.138 | 5.72 | 24.37 | 27 | -- | -- |
| 52.33 | 0.337 | 9.25 | -1.26 | 0.729 | -0.944 | 0.691 | -- | -0.141 | 5.73 | 24.4 | 26 | -- | -- |
| 53.42 | 0.34 | 9.25 | -1.26 | 0.732 | -0.94 | -- | 0.000239 | -0.143 | 5.72 | 24.3 | 26 | -- | -- |
| 53.42 | 0.34 | 9.25 | -1.26 | 0.732 | -0.94 | -- | -- | -0.143 | 5.72 | 24.3 | 26 | -- | -- |
| 80.46 | 0.42 | 9.26 | -1.21 | -- | -0.791 | -- | 0.0844 | -0.0985 | -- | 24.1 | 23 | -- | -- |
| 64.97 | 0.378 | 9.21 | -1.05 | 0.687 | -- | 0.648 | -- | 0.0199 | 6.54 | -- | -- | -- | -- |
| 66.03 | 0.381 | 9.22 | -1.04 | 0.689 | -- | -- | -- | 0.018 | 6.56 | -- | -- | -- | -- |
| 80.47 | 0.42 | 9.26 | -1.2 | -- | -0.799 | -- | -- | -0.0962 | -- | 24.1 | 18 | -- | -- |
| 91.51 | 0.446 | 9.2 | -- | 0.69 | -0.444 | -- | -- | 0.0707 | 6.24 | 24.2 | 29 | -- | -- |
| 90.77 | 0.445 | 9.23 | -1.03 | -- | -- | -- | -- | 0.0321 | -- | -- | -- | -- | -- |
| 94.67 | 0.455 | 9.19 | -- | 0.676 | -- | -- | -- | 0.134 | 6.65 | -- | -- | -- | -- |
| 115.79 | 0.503 | 9.22 | -- | -- | -0.4 | -- | -- | 0.0932 | -- | 23.95 | 13 | -- | -- |
| 118.52 | 0.508 | 9.2 | -- | -- | -- | -- | -- | 0.146 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.02 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 3 | 52.33 | temperature | 25 | 10 | < th | dose dependent | rect. | 16 | 22 |
| 11 | 52.41 | temperature | 25 | 10 | < th | dose dependent | rect. | 10 | 22 |
| 18 | 52.46 | temperature | 25 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 21 | 52.48 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 22 | 52.48 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 29 | 52.50 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 35 | 52.55 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 36 | 52.56 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 37 | 52.57 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 38 | 52.57 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 50 | 52.71 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 6 |
| 90 | 53.16 | radiation | 1 | 1440 | > th | dose independent | rect. | 7 | 8 |
| 92 | 53.17 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 93 | 53.19 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 22 |
| 95 | 53.19 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 9 |
| 98 | 53.21 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 107 | 53.27 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 117 | 53.34 | temperature | 20 | 720 | > th | dose dependent | rect. | 18 | 3 |
| 138 | 53.48 | temperature | 25 | 720 | > th | dose independent | rect. | 18 | 3 |
| 140 | 53.50 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 7 |
| 144 | 53.51 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 17 |
| 147 | 53.52 | radiation | 1 | 1440 | < th | dose dependent | rect. | 4 | 13 |
| 153 | 53.52 | radiation | 1 | 1440 | < th | dose dependent | rect. | 20 | 21 |
| 158 | 53.53 | radiation | 1 | 1440 | < th | dose dependent | sin | 1 | NA |
| 172 | 53.54 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 191 | 53.59 | radiation | 1 | 1440 | < th | dose independent | sin | 0 | NA |
| 197 | 53.62 | radiation | 1 | 1440 | > th | dose independent | sin | 0 | NA |
| 225 | 53.73 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 11 |
| 228 | 53.73 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 17 |
| 235 | 53.74 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 249 | 53.74 | radiation | 1 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 250 | 53.74 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 294 | 53.83 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 14 |
| 295 | 53.83 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 18 |
| 344 | 53.92 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 14 |
| 345 | 53.92 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 16 |
| 346 | 53.92 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 20 |
| 361 | 53.93 | radiation | 1 | 1440 | < th | dose independent | rect. | 24 | 19 |
| 370 | 53.94 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 399 | 53.95 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 12 |
| 415 | 53.96 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 14 |
| 430 | 53.96 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 432 | 53.97 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 433 | 53.97 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 12 |
| 480 | 53.97 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 23 |
| 496 | 53.98 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 511 | 53.98 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 20 |
| 545 | 53.99 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 23 |
| 574 | 54.00 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 23 |
| 581 | 54.02 | temperature | 25 | 10 | < th | dose dependent | rect. | 16 | 16 |
| 593 | 54.04 | temperature | 25 | 720 | > th | dose independent | rect. | 10 | 14 |
| 647 | 54.09 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 15 |
| 664 | 54.10 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 18 |
| 696 | 54.13 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 18 |
| 770 | 54.20 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 9 |
| 884 | 54.37 | temperature | 25 | 720 | > th | dose independent | rect. | 18 | 1 |
| 885 | 54.37 | temperature | 25 | 720 | < th | dose independent | rect. | 19 | 2 |
| 898 | 54.39 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 13 |
| 910 | 54.42 | temperature | 25 | 720 | > th | dose independent | rect. | 20 | 1 |
| 914 | 54.42 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 18 |
| 945 | 54.48 | temperature | 25 | 720 | < th | dose independent | rect. | 18 | 4 |