BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0815400 Os03g0815400|AK067057
(210 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0815400 Ribosomal protein L17-like protein 391 e-109
Os01g0839300 Similar to 50S ribosomal protein L17 100 1e-21
Os05g0460700 Ribosomal protein L17 family protein 99 2e-21
>Os03g0815400 Ribosomal protein L17-like protein
Length = 210
Score = 391 bits (1005), Expect = e-109, Method: Compositional matrix adjust.
Identities = 197/210 (93%), Positives = 197/210 (93%)
Query: 1 MAAFATATPSPAISVSPWSMSSLRAALPSPTRASPAGKLRXXXXXXXXXXXXXVGCLSSF 60
MAAFATATPSPAISVSPWSMSSLRAALPSPTRASPAGKLR VGCLSSF
Sbjct: 1 MAAFATATPSPAISVSPWSMSSLRAALPSPTRASPAGKLRSSFSPAAAATAASVGCLSSF 60
Query: 61 SGLTPISPLLSLGEETSSFEHRLFGIDARGRIVAMRHGRRVPKLSRPPDQRKALLRGLTT 120
SGLTPISPLLSLGEETSSFEHRLFGIDARGRIVAMRHGRRVPKLSRPPDQRKALLRGLTT
Sbjct: 61 SGLTPISPLLSLGEETSSFEHRLFGIDARGRIVAMRHGRRVPKLSRPPDQRKALLRGLTT 120
Query: 121 QLLKYGRIKTTRPRAKAMRKYVEKMITLAKDGSLHKRRQALAFIYEKHIVHALFAEVADR 180
QLLKYGRIKTTRPRAKAMRKYVEKMITLAKDGSLHKRRQALAFIYEKHIVHALFAEVADR
Sbjct: 121 QLLKYGRIKTTRPRAKAMRKYVEKMITLAKDGSLHKRRQALAFIYEKHIVHALFAEVADR 180
Query: 181 YGEREGGYTRIIPTFPRRGDNAPMAYIELV 210
YGEREGGYTRIIPTFPRRGDNAPMAYIELV
Sbjct: 181 YGEREGGYTRIIPTFPRRGDNAPMAYIELV 210
>Os01g0839300 Similar to 50S ribosomal protein L17
Length = 161
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/108 (47%), Positives = 72/108 (66%)
Query: 103 KLSRPPDQRKALLRGLTTQLLKYGRIKTTRPRAKAMRKYVEKMITLAKDGSLHKRRQALA 162
KL R R ++LR + +QL+K+ RI+TT +AK +R+ ++M+ L K+G+L R+A A
Sbjct: 6 KLGRHAAHRVSMLRTMVSQLVKHERIETTVAKAKEVRRKADQMVQLGKEGTLDAARRASA 65
Query: 163 FIYEKHIVHALFAEVADRYGEREGGYTRIIPTFPRRGDNAPMAYIELV 210
F+ +VH LF E+A RY R GGYTR++ T R GD APMAYIE V
Sbjct: 66 FVRGDDVVHKLFTELAYRYKNRAGGYTRLLRTRIRVGDAAPMAYIEFV 113
>Os05g0460700 Ribosomal protein L17 family protein
Length = 196
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 72/106 (67%)
Query: 103 KLSRPPDQRKALLRGLTTQLLKYGRIKTTRPRAKAMRKYVEKMITLAKDGSLHKRRQALA 162
KL R R ++LR + +QL+K+ RI+TT +AK +R ++M+ L K+G+L R+A A
Sbjct: 6 KLGRHAAHRVSMLRTMVSQLVKHERIETTVAKAKEVRTKADQMVQLGKEGTLDAARRASA 65
Query: 163 FIYEKHIVHALFAEVADRYGEREGGYTRIIPTFPRRGDNAPMAYIE 208
F+ ++VH LF E+A RY +R GGYTR++ T R GD APMAYIE
Sbjct: 66 FVRGDNVVHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIE 111
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.135 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,948,115
Number of extensions: 264628
Number of successful extensions: 918
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 918
Number of HSP's successfully gapped: 3
Length of query: 210
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 114
Effective length of database: 12,023,257
Effective search space: 1370651298
Effective search space used: 1370651298
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)