Os03g0815400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ribosomal protein L17-like protein.
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Os03g0815400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ribosomal protein L17-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 85.4 | 0.434 | 14.7 | 0.237 | 1.64 | 1.11 | 0.236 | 2.07 | -0.319 | 22 | 30.69 | 338 | -- | -- |
| 88.73 | 0.439 | 14.7 | 0.165 | 1.62 | 1.03 | -0.0248 | -- | -0.335 | 22.1 | 26.36 | 379 | -- | -- |
| 85.49 | 0.431 | 14.7 | 0.235 | 1.61 | 1.1 | -- | 1.87 | -0.328 | 22.1 | 31.43 | 355 | -- | -- |
| 88.68 | 0.439 | 14.7 | 0.171 | 1.6 | 1.02 | -- | -- | -0.337 | 22.1 | 27.07 | 390 | -- | -- |
| 144.46 | 0.56 | 14.7 | 0.0818 | -- | 1.96 | -- | 0.649 | -0.475 | -- | -1.443e-06 | 980 | -- | -- |
| 104.45 | 0.479 | 14.6 | 0.216 | 1.64 | -- | 0.0897 | -- | -0.249 | 21.1 | -- | -- | -- | -- |
| 104.47 | 0.479 | 14.6 | 0.212 | 1.64 | -- | -- | -- | -0.249 | 21.1 | -- | -- | -- | -- |
| 143.7 | 0.558 | 14.6 | 0.0443 | -- | 1.83 | -- | -- | -0.499 | -- | -8.536 | 964 | -- | -- |
| 89.45 | 0.441 | 14.7 | -- | 1.6 | 1.04 | -- | -- | -0.356 | 22.2 | 26.26 | 390 | -- | -- |
| 259.16 | 0.752 | 14.6 | 0.216 | -- | -- | -- | -- | -0.259 | -- | -- | -- | -- | -- |
| 105.66 | 0.481 | 14.6 | -- | 1.64 | -- | -- | -- | -0.273 | 21.1 | -- | -- | -- | -- |
| 143.75 | 0.558 | 14.6 | -- | -- | 1.83 | -- | -- | -0.504 | -- | -0.07153 | 964 | -- | -- |
| 260.39 | 0.753 | 14.6 | -- | -- | -- | -- | -- | -0.283 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 81.87 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 3 | 81.89 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 13 | 82.06 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 8 | 2 |
| 24 | 82.13 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 7 | 14 |
| 28 | 82.14 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 16 |
| 74 | 82.39 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 8 |
| 78 | 82.41 | temperature | 25.0 | 14400 | < th | dose dependent | sin | 22 | NA |
| 86 | 82.43 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 11 |
| 101 | 82.48 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 6 | 9 |
| 110 | 82.51 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 13 |
| 135 | 82.60 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 9 | 13 |
| 170 | 82.71 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 2 |
| 173 | 82.72 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 22 | NA |
| 193 | 82.77 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 251 | 82.96 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 10 |
| 270 | 83.01 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 19 | 6 |
| 274 | 83.02 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 277 | 83.03 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 9 | 15 |
| 278 | 83.03 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 6 | 17 |
| 298 | 83.07 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 10 | 13 |
| 312 | 83.09 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 313 | 83.09 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 10 |
| 316 | 83.09 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 10 |
| 328 | 83.11 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 335 | 83.12 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 18 | 7 |
| 344 | 83.14 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 6 | 17 |
| 360 | 83.17 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 20 | 3 |
| 363 | 83.18 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 19 | 2 |
| 367 | 83.18 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 372 | 83.20 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 7 |
| 406 | 83.25 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 7 | 13 |
| 427 | 83.28 | radiation | 40.0 | 270 | < th | dose independent | rect. | 2 | 23 |
| 503 | 83.38 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 525 | 83.42 | humidity | 90.0 | 14400 | < th | dose independent | sin | 21 | NA |
| 619 | 83.52 | humidity | 90.0 | 14400 | > th | dose independent | sin | 20 | NA |
| 646 | 83.54 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 8 |
| 699 | 83.61 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 8 | 8 |
| 701 | 83.61 | temperature | 10.0 | 14400 | > th | dose dependent | sin | 22 | NA |
| 704 | 83.61 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 8 | 8 |
| 808 | 83.70 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 10 |
| 825 | 83.72 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 13 | 8 |
| 923 | 83.81 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 9 | 6 |
| 942 | 83.83 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 6 | 13 |
| 965 | 83.85 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 988 | 83.87 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 8 | 6 |
| 994 | 83.87 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 8 | 6 |