BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0802400 Os03g0802400|AK110996
         (82 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0802400  Similar to Avr9/Cf-9 rapidly elicited protein ...   166   3e-42

>Os03g0802400 Similar to Avr9/Cf-9 rapidly elicited protein 102 (Fragment)
          Length = 82

 Score =  166 bits (421), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 82/82 (100%), Positives = 82/82 (100%)

Query: 1  MVTDRYGSTSAASRRACRFMCRPTSVCSCSRCRFCHTTVHSTAIRLSTTPEFSPFNNDDD 60
          MVTDRYGSTSAASRRACRFMCRPTSVCSCSRCRFCHTTVHSTAIRLSTTPEFSPFNNDDD
Sbjct: 1  MVTDRYGSTSAASRRACRFMCRPTSVCSCSRCRFCHTTVHSTAIRLSTTPEFSPFNNDDD 60

Query: 61 DDVASICLKTKLISQFTNTQKD 82
          DDVASICLKTKLISQFTNTQKD
Sbjct: 61 DDVASICLKTKLISQFTNTQKD 82



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.129    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,998,689
Number of extensions: 107321
Number of successful extensions: 488
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 488
Number of HSP's successfully gapped: 1
Length of query: 82
Length of database: 17,035,801
Length adjustment: 52
Effective length of query: 30
Effective length of database: 14,320,673
Effective search space: 429620190
Effective search space used: 429620190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)