FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0802400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Avr9/Cf-9 rapidly elicited protein 102 (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.98 (0.042) R2 : 6.76e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0155 (0.0884) R2dN8 : 8.73e-05 R2N8 : 6.76e-05
σ : 0.791
deviance : 287.09
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
275.44 0.78 3.01 0.113 0.234 1.5 0.0886 2.53 0.0646 23.4 0.2902 1412 -- --
277.81 0.776 2.99 0.304 0.212 0.818 -0.106 -- 0.0469 22.3 0.3172 1382 -- --
275.41 0.773 3 0.122 0.236 1.48 -- 2.46 0.0686 23.3 0.257 1411 -- --
277.7 0.776 2.99 0.311 0.22 0.85 -- -- 0.0766 23.1 0.41 1385 -- --
276.87 0.775 3 0.128 -- 1.5 -- 2.47 0.0693 -- 0.2473 1450 -- --
285.66 0.792 2.98 0.0958 0.124 -- -0.197 -- -0.00507 22.7 -- -- -- --
285.82 0.792 2.98 0.103 0.125 -- -- -- -0.00465 23 -- -- -- --
278.24 0.777 2.95 0.304 -- 0.928 -- -- 0.105 -- 0.6097 1505 -- --
279.98 0.779 2.99 -- 0.236 0.752 -- -- 0.0422 22.7 0.6706 1379 -- --
286.8 0.791 2.98 0.106 -- -- -- -- -0.00374 -- -- -- -- --
286.11 0.791 2.99 -- 0.126 -- -- -- -0.0162 23 -- -- -- --
280.14 0.78 2.97 -- -- 0.737 -- -- 0.0671 -- 2.377 1530 -- --
287.09 0.791 2.98 -- -- -- -- -- -0.0155 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 264.75 radiation 1 90 < th dose independent rect. 14 1
2 264.75 radiation 1 90 < th dose dependent rect. 14 1
3 264.98 radiation 10 90 < th dose dependent rect. 8 8
4 266.28 radiation 1 90 < th dose dependent rect. 13 3
6 266.97 radiation 1 1440 > th dose independent rect. 8 5
8 267.43 radiation 1 720 < th dose dependent rect. 14 2
17 267.74 radiation 1 1440 < th dose independent rect. 9 4
18 267.74 radiation 1 1440 < th dose dependent rect. 9 4
19 267.87 radiation 1 1440 < th dose independent rect. 9 7
20 267.90 radiation 1 1440 > th dose independent rect. 8 8
24 267.96 radiation 1 1440 < th dose independent rect. 11 5
32 268.06 radiation 1 1440 > th dose independent rect. 11 5
33 268.07 radiation 1 1440 < th dose independent rect. 9 2
35 268.07 radiation 1 1440 < th dose dependent rect. 9 2
38 268.12 radiation 1 90 < th dose independent rect. 13 3
39 268.18 radiation 1 1440 < th dose dependent rect. 8 8
46 268.26 radiation 1 720 < th dose independent rect. 14 1
51 268.39 radiation 1 1440 < th dose independent rect. 12 2
52 268.39 radiation 1 1440 < th dose dependent rect. 12 2
77 268.66 humidity 90 270 > th dose dependent rect. 11 2
80 268.69 radiation 1 90 < th dose independent rect. 8 8
83 268.73 humidity 90 270 > th dose independent rect. 11 2
108 269.31 radiation 1 270 < th dose independent rect. 11 4
117 269.48 radiation 1 1440 > th dose independent rect. 9 1
120 269.49 radiation 1 90 < th dose dependent rect. 5 11
168 270.58 wind 1 90 < th dose dependent rect. 24 1
175 270.97 wind 1 90 < th dose independent rect. 24 1
193 271.72 radiation 1 90 < th dose independent rect. 5 11
196 271.89 temperature 25 1440 > th dose independent rect. 11 3
215 272.08 humidity 80 1440 > th dose dependent rect. 12 1
233 272.26 humidity 90 1440 > th dose dependent rect. 10 3
242 272.40 temperature 25 1440 < th dose independent rect. 11 2
245 272.42 temperature 25 1440 < th dose independent rect. 9 5
249 272.52 temperature 25 1440 > th dose independent rect. 13 1
273 272.78 radiation 10 4320 < th dose dependent rect. 19 10
275 272.80 humidity 90 1440 > th dose independent rect. 10 3
299 272.94 radiation 1 10 < th dose independent rect. 13 3
315 273.13 humidity 80 1440 > th dose independent rect. 12 1
317 273.15 radiation 10 90 < th dose dependent rect. 21 19
326 273.23 radiation 10 4320 < th dose dependent rect. 4 1
328 273.25 humidity 70 14400 > th dose dependent rect. 6 1
329 273.26 humidity 50 14400 > th dose dependent rect. 6 1
339 273.33 humidity 60 14400 < th dose independent rect. 6 1
341 273.33 humidity 60 14400 < th dose independent rect. 20 1
343 273.33 radiation 20 14400 > th dose independent rect. 17 1
394 273.33 humidity 60 14400 < th dose dependent rect. 6 1
396 273.33 humidity 60 14400 < th dose dependent rect. 20 1
398 273.33 radiation 20 14400 > th dose dependent rect. 17 1
457 273.42 radiation 1 1440 < th dose independent rect. 19 10
482 273.58 radiation 1 30 < th dose independent rect. 21 20
485 273.61 radiation 1 1440 > th dose independent rect. 4 1
495 273.61 radiation 1 1440 > th dose dependent rect. 4 1
507 273.64 humidity 80 1440 < th dose independent rect. 12 1
511 273.67 humidity 60 14400 > th dose independent rect. 7 1
520 273.74 radiation 10 4320 < th dose dependent rect. 21 8
524 273.76 radiation 1 14400 < th dose dependent rect. 9 1
549 273.82 radiation 10 90 < th dose dependent rect. 19 22
558 273.88 radiation 1 1440 < th dose independent rect. 4 1
559 273.88 radiation 1 1440 < th dose dependent rect. 5 11
579 274.05 temperature 25 10 > th dose independent rect. 18 23
609 274.11 humidity 90 14400 < th dose dependent rect. 21 10
612 274.13 humidity 60 14400 > th dose independent rect. 21 1
644 274.24 radiation 40 14400 < th dose dependent rect. 18 4
649 274.30 radiation 1 14400 > th dose independent rect. 8 2
651 274.31 humidity 90 14400 < th dose dependent rect. 21 6
655 274.32 radiation 40 14400 < th dose dependent rect. 18 7
658 274.32 radiation 1 1440 < th dose dependent rect. 2 14
660 274.32 radiation 1 1440 < th dose dependent rect. 23 17
663 274.34 radiation 10 43200 < th dose dependent rect. 17 12
673 274.37 radiation 30 43200 < th dose dependent rect. 17 12
683 274.38 radiation 1 1440 < th dose dependent rect. 20 20
684 274.39 radiation 40 14400 < th dose independent rect. 16 10
685 274.39 radiation 1 720 > th dose independent rect. 9 21
708 274.45 radiation 10 43200 < th dose dependent rect. 17 5
712 274.45 radiation 10 43200 < th dose dependent rect. 17 8
718 274.46 radiation 10 43200 < th dose dependent rect. 17 3
729 274.47 wind 7 4320 > th dose independent rect. 18 1
730 274.47 radiation 1 14400 < th dose independent rect. 8 2
761 274.51 humidity 60 10 < th dose independent rect. 17 1
766 274.52 radiation 10 4320 < th dose dependent rect. 24 5
805 274.60 wind 7 10 > th dose dependent rect. 9 1
813 274.62 temperature 25 1440 > th dose independent rect. 15 1
822 274.64 temperature 25 1440 < th dose dependent rect. 9 5
828 274.66 radiation 40 14400 < th dose independent rect. 16 7
831 274.67 temperature 25 1440 < th dose independent rect. 15 1
895 274.79 wind 5 4320 < th dose independent rect. 18 1
907 274.82 humidity 90 14400 < th dose dependent rect. 6 1
928 274.88 humidity 90 14400 < th dose independent rect. 4 3
929 274.88 wind 5 4320 > th dose dependent rect. 18 1
931 274.89 radiation 20 14400 < th dose independent rect. 17 6
933 274.90 radiation 40 43200 < th dose dependent rect. 4 1
935 274.91 wind 7 43200 > th dose independent rect. 13 1
939 274.92 temperature 25 1440 < th dose dependent rect. 11 2
948 274.94 radiation 20 14400 < th dose independent rect. 17 13
978 274.98 radiation 20 14400 < th dose independent rect. 17 9
980 274.98 radiation 40 14400 < th dose independent rect. 16 14
985 274.99 wind 3 1440 > th dose independent rect. 14 8
986 274.99 humidity 60 14400 > th dose independent rect. 21 11