BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0801600 Os03g0801600|AK069591
         (793 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0801600  Similar to Vacuolor-sorting protein-like prote...  1616   0.0  

>Os03g0801600 Similar to Vacuolor-sorting protein-like protein (Fragment)
          Length = 793

 Score = 1616 bits (4184), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 783/793 (98%), Positives = 783/793 (98%)

Query: 1   MLPDGGADDEERWLAEGIAGVQQNAFYMHRALDSNNLKDALKYSAQMLSELRTSRLSPHK 60
           MLPDGGADDEERWLAEGIAGVQQNAFYMHRALDSNNLKDALKYSAQMLSELRTSRLSPHK
Sbjct: 1   MLPDGGADDEERWLAEGIAGVQQNAFYMHRALDSNNLKDALKYSAQMLSELRTSRLSPHK 60

Query: 61  YYDLYMRAFDEMRKLEMFFREETRRGSCSVVDLYELVQHAGNVLPRLYLLCTVGSVYIKS 120
           YYDLYMRAFDEMRKLEMFFREETRRGSCSVVDLYELVQHAGNVLPRLYLLCTVGSVYIKS
Sbjct: 61  YYDLYMRAFDEMRKLEMFFREETRRGSCSVVDLYELVQHAGNVLPRLYLLCTVGSVYIKS 120

Query: 121 KEAPAKDVLKDLVEMCRGIQHPLRGLFLRSYLSQISRDKLPDIGSEYEGDADSINVAVEF 180
           KEAPAKDVLKDLVEMCRGIQHPLRGLFLRSYLSQISRDKLPDIGSEYEGDADSINVAVEF
Sbjct: 121 KEAPAKDVLKDLVEMCRGIQHPLRGLFLRSYLSQISRDKLPDIGSEYEGDADSINVAVEF 180

Query: 181 VLQNFIEMNKLWVRMQHQGPVXXXXXXXXXXNELRDLVGKNLHVLSQIEGVDLDMYKETV 240
           VLQNFIEMNKLWVRMQHQGPV          NELRDLVGKNLHVLSQIEGVDLDMYKETV
Sbjct: 181 VLQNFIEMNKLWVRMQHQGPVREKEKRGKERNELRDLVGKNLHVLSQIEGVDLDMYKETV 240

Query: 241 LPRILEQVVNCKDELAQFYLMDCIIQVFPDEYHLQTLETLLSAFPQLQPNVDIKTVLSQL 300
           LPRILEQVVNCKDELAQFYLMDCIIQVFPDEYHLQTLETLLSAFPQLQPNVDIKTVLSQL
Sbjct: 241 LPRILEQVVNCKDELAQFYLMDCIIQVFPDEYHLQTLETLLSAFPQLQPNVDIKTVLSQL 300

Query: 301 MDRLSSYAAASPEVLPEFLQVEAFAKFSNAIGKVIEAQVDMPVVGAVTLYVSLLTFTLRV 360
           MDRLSSYAAASPEVLPEFLQVEAFAKFSNAIGKVIEAQVDMPVVGAVTLYVSLLTFTLRV
Sbjct: 301 MDRLSSYAAASPEVLPEFLQVEAFAKFSNAIGKVIEAQVDMPVVGAVTLYVSLLTFTLRV 360

Query: 361 HPDRLDYVDQVLGACVKKLSGNAKLEDSRATKQIVALLSAPLEKYSNIVTALELSNYPRV 420
           HPDRLDYVDQVLGACVKKLSGNAKLEDSRATKQIVALLSAPLEKYSNIVTALELSNYPRV
Sbjct: 361 HPDRLDYVDQVLGACVKKLSGNAKLEDSRATKQIVALLSAPLEKYSNIVTALELSNYPRV 420

Query: 421 MDYLDNSTTKVMALVIIQSIMKNTTCISTSDKIEALFDLIKGLIKDMDGAQNDELDDEDF 480
           MDYLDNSTTKVMALVIIQSIMKNTTCISTSDKIEALFDLIKGLIKDMDGAQNDELDDEDF
Sbjct: 421 MDYLDNSTTKVMALVIIQSIMKNTTCISTSDKIEALFDLIKGLIKDMDGAQNDELDDEDF 480

Query: 481 KEEQNSVARLIHMLHNDDHEEMLKILCTVQKHILQGGPKRLPFTVPSLVFSALKLVRRLQ 540
           KEEQNSVARLIHMLHNDDHEEMLKILCTVQKHILQGGPKRLPFTVPSLVFSALKLVRRLQ
Sbjct: 481 KEEQNSVARLIHMLHNDDHEEMLKILCTVQKHILQGGPKRLPFTVPSLVFSALKLVRRLQ 540

Query: 541 GQDGDVIGEEVPATPKKIFQILHQTIEALSCVPSPELALRLYLQCAEAANDCDLEPVAYE 600
           GQDGDVIGEEVPATPKKIFQILHQTIEALSCVPSPELALRLYLQCAEAANDCDLEPVAYE
Sbjct: 541 GQDGDVIGEEVPATPKKIFQILHQTIEALSCVPSPELALRLYLQCAEAANDCDLEPVAYE 600

Query: 601 FFTQAFILYEEEIADSKAQITAIHLIIGTLQRMNIFGVENRDTLTHKTTGYSAKLLKKPD 660
           FFTQAFILYEEEIADSKAQITAIHLIIGTLQRMNIFGVENRDTLTHKTTGYSAKLLKKPD
Sbjct: 601 FFTQAFILYEEEIADSKAQITAIHLIIGTLQRMNIFGVENRDTLTHKTTGYSAKLLKKPD 660

Query: 661 QCRAVYACSHLFWTDDQDGIMDGERVLLCLKRALRIANAAQQMANVTRGSSGSVALFIEI 720
           QCRAVYACSHLFWTDDQDGIMDGERVLLCLKRALRIANAAQQMANVTRGSSGSVALFIEI
Sbjct: 661 QCRAVYACSHLFWTDDQDGIMDGERVLLCLKRALRIANAAQQMANVTRGSSGSVALFIEI 720

Query: 721 LNKYLYFFEKGIPEITNTVIQDLIELIRTEKQSENTVADPSTEAFFASTLRYIEFQKQKG 780
           LNKYLYFFEKGIPEITNTVIQDLIELIRTEKQSENTVADPSTEAFFASTLRYIEFQKQKG
Sbjct: 721 LNKYLYFFEKGIPEITNTVIQDLIELIRTEKQSENTVADPSTEAFFASTLRYIEFQKQKG 780

Query: 781 GSIGEKYEQIKTT 793
           GSIGEKYEQIKTT
Sbjct: 781 GSIGEKYEQIKTT 793



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.136    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 24,662,675
Number of extensions: 983400
Number of successful extensions: 2299
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2299
Number of HSP's successfully gapped: 1
Length of query: 793
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 684
Effective length of database: 11,344,475
Effective search space: 7759620900
Effective search space used: 7759620900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 160 (66.2 bits)