BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0800500 Os03g0800500|AK070229
         (322 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0800500  Putative small multi-drug export family protein     399   e-111

>Os03g0800500 Putative small multi-drug export family protein
          Length = 322

 Score =  399 bits (1025), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/261 (80%), Positives = 209/261 (80%)

Query: 62  VTGESRAIAGTGRCLVAPMGGDETERDXXXXXXPDWXXXXXXXXXXXXXXXXXXXXXXXX 121
           VTGESRAIAGTGRCLVAPMGGDETERD      PDW                        
Sbjct: 62  VTGESRAIAGTGRCLVAPMGGDETERDATAATAPDWGALARRLALGALGCAVLCCGGAAV 121

Query: 122 XXEDSIKASGFGLRVAASLRRLGWADEAVVFTLATLPVIELRGAIPVGYWMRLDPIRLTV 181
             EDSIKASGFGLRVAASLRRLGWADEAVVFTLATLPVIELRGAIPVGYWMRLDPIRLTV
Sbjct: 122 AAEDSIKASGFGLRVAASLRRLGWADEAVVFTLATLPVIELRGAIPVGYWMRLDPIRLTV 181

Query: 182 LSVLGNMVPVPFIILYLKKLAAFLSQRSASATRIMDLLFERARQKAAPVEEFQWLGLMLF 241
           LSVLGNMVPVPFIILYLKKLAAFLSQRSASATRIMDLLFERARQKAAPVEEFQWLGLMLF
Sbjct: 182 LSVLGNMVPVPFIILYLKKLAAFLSQRSASATRIMDLLFERARQKAAPVEEFQWLGLMLF 241

Query: 242 VAVPFPGTGAWTGAIISSVLGMPFWSGFSAXXXXXXXXXXXXXXXXXXXXKYAIITGLVL 301
           VAVPFPGTGAWTGAIISSVLGMPFWSGFSA                    KYAIITGLVL
Sbjct: 242 VAVPFPGTGAWTGAIISSVLGMPFWSGFSANFVGVVLAGLLVNLLMNLGLKYAIITGLVL 301

Query: 302 FFLSTVMWGVLRSLKKSLNAK 322
           FFLSTVMWGVLRSLKKSLNAK
Sbjct: 302 FFLSTVMWGVLRSLKKSLNAK 322



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.138    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,526,089
Number of extensions: 206337
Number of successful extensions: 574
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 572
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 221
Effective length of database: 11,762,187
Effective search space: 2599443327
Effective search space used: 2599443327
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 156 (64.7 bits)