BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0797700 Os03g0797700|AK061648
         (318 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0797700  Conserved hypothetical protein                      354   4e-98

>Os03g0797700 Conserved hypothetical protein
          Length = 318

 Score =  354 bits (909), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 188/267 (70%), Positives = 188/267 (70%)

Query: 36  TVSLKNQIRSTERLLRKDLPNDIRVAXXXXXXXXXXXXXXXXXXAIQRTVQLRDRKIKFF 95
           TVSLKNQIRSTERLLRKDLPNDIRVA                  AIQRTVQLRDRKIKFF
Sbjct: 36  TVSLKNQIRSTERLLRKDLPNDIRVAQEKKLEELKRQQELQNQLAIQRTVQLRDRKIKFF 95

Query: 96  ERRKIERMIRRLEKQQRSNADDASNKLSKLKEDLEYVRFFPKNEKYVSLFSGGNTPDMLE 155
           ERRKIERMIRRLEKQQRSNADDASNKLSKLKEDLEYVRFFPKNEKYVSLFSGGNTPDMLE
Sbjct: 96  ERRKIERMIRRLEKQQRSNADDASNKLSKLKEDLEYVRFFPKNEKYVSLFSGGNTPDMLE 155

Query: 156 KRNKWRKQIKENLMAAAENGKDLEETAXXXXXXXXXXXXXXXXXXXXXXXXXXXWTDXXX 215
           KRNKWRKQIKENLMAAAENGKDLEETA                           WTD   
Sbjct: 156 KRNKWRKQIKENLMAAAENGKDLEETASDDDTVDVSDDDFFMSGSSSDEEADDEWTDKSA 215

Query: 216 XXXXXXXXXXXXXXXXXDEKNQRQRDARVLMPPPRSLAPNRTRPGVKHVLXXXXXXXXXX 275
                            DEKNQRQRDARVLMPPPRSLAPNRTRPGVKHVL          
Sbjct: 216 KEPASSASGKAASGMSSDEKNQRQRDARVLMPPPRSLAPNRTRPGVKHVLSSSSNTSNST 275

Query: 276 XXXXFKNRRAANQPGDHNSNLSSNSDA 302
               FKNRRAANQPGDHNSNLSSNSDA
Sbjct: 276 SGGTFKNRRAANQPGDHNSNLSSNSDA 302



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.130    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,328,046
Number of extensions: 188237
Number of successful extensions: 638
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 636
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 217
Effective length of database: 11,762,187
Effective search space: 2552394579
Effective search space used: 2552394579
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)