BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0795500 Os03g0795500|AK101877
         (191 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0795500  Protein of unknown function DUF1000 family pro...   319   8e-88
AK110198                                                           72   2e-13

>Os03g0795500 Protein of unknown function DUF1000 family protein
          Length = 191

 Score =  319 bits (818), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 155/169 (91%), Positives = 155/169 (91%)

Query: 23  VPRGQVDLVDFIDWSGVECLNQDPAHSIVNALKQGYRDDEGLYLASDSDEQLLIHIPFMQ 82
           VPRGQVDLVDFIDWSGVECLNQDPAHSIVNALKQGYRDDEGLYLASDSDEQLLIHIPFMQ
Sbjct: 23  VPRGQVDLVDFIDWSGVECLNQDPAHSIVNALKQGYRDDEGLYLASDSDEQLLIHIPFMQ 82

Query: 83  VVKLHSALFKGPEEDGPKTIKLFCNKEHMGFSNVNDYPPXXXXXXXXXXXXXXKPMQLKY 142
           VVKLHSALFKGPEEDGPKTIKLFCNKEHMGFSNVNDYPP              KPMQLKY
Sbjct: 83  VVKLHSALFKGPEEDGPKTIKLFCNKEHMGFSNVNDYPPSDSLDLSSNHLSESKPMQLKY 142

Query: 143 VKFQNVRSLTIFIEDNQSGSDVSKILKIALYGTTVDTTNMKDLKKIEEH 191
           VKFQNVRSLTIFIEDNQSGSDVSKILKIALYGTTVDTTNMKDLKKIEEH
Sbjct: 143 VKFQNVRSLTIFIEDNQSGSDVSKILKIALYGTTVDTTNMKDLKKIEEH 191



>AK110198 
          Length = 961

 Score = 72.0 bits (175), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 81/172 (47%), Gaps = 12/172 (6%)

Query: 26  GQVDLVDFIDWSGVECLNQDPAHSIVNALKQGYRDDEGLYLASDSDEQLLIHIPFMQVVK 85
           G   L+  ++      LN+ P   + + L        G +L SD+D+QLLI + F Q VK
Sbjct: 143 GHTSLLKVVEPKQSSALNEKPDRRLHDILAG---PSGGKWLESDADDQLLISLAFKQQVK 199

Query: 86  LHSALFKG-PEE--DGPKTIKLFCNKEHMGFSNV------NDYPPXXXXXXXXXXXXXXK 136
           L   L +  P      P+ +K+F N+  +GF +        ++                K
Sbjct: 200 LSGILLRTLPSHFAHAPRQVKIFVNRPGLGFEDATTENADQEFELPDEHVRGAENGGGGK 259

Query: 137 PMQLKYVKFQNVRSLTIFIEDNQSGSDVSKILKIALYGTTVDTTNMKDLKKI 188
              L++VKFQ V SLTI +  NQ  ++ ++I  I ++G    TT+M +L+KI
Sbjct: 260 AYSLRFVKFQKVDSLTIAVLSNQEEAETTRIDAIDVFGIASHTTDMSELQKI 311



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,078,907
Number of extensions: 182655
Number of successful extensions: 360
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 359
Number of HSP's successfully gapped: 2
Length of query: 191
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 96
Effective length of database: 12,075,471
Effective search space: 1159245216
Effective search space used: 1159245216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)