BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0788300 Os03g0788300|AK069469
         (1184 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0788300  Conserved hypothetical protein                     1439   0.0  

>Os03g0788300 Conserved hypothetical protein
          Length = 1184

 Score = 1439 bits (3724), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 728/823 (88%), Positives = 728/823 (88%)

Query: 1   MRKTFTRVEFDRLTDLLRARTVESDLSAPADNLDNKNEARNTMDGIGGSTSHGMAADHSI 60
           MRKTFTRVEFDRLTDLLRARTVESDLSAPADNLDNKNEARNTMDGIGGSTSHGMAADHSI
Sbjct: 1   MRKTFTRVEFDRLTDLLRARTVESDLSAPADNLDNKNEARNTMDGIGGSTSHGMAADHSI 60

Query: 61  AADDPVCGASSPAELAKQYMNSRYSKENRPNSLRSQVLLKNKAEASNIAYDRRRPGGPFV 120
           AADDPVCGASSPAELAKQYMNSRYSKENRPNSLRSQVLLKNKAEASNIAYDRRRPGGPFV
Sbjct: 61  AADDPVCGASSPAELAKQYMNSRYSKENRPNSLRSQVLLKNKAEASNIAYDRRRPGGPFV 120

Query: 121 QELSQFSNENSELPVNGYVTPGLHGRSAIYRMSCSPFFKGPSSSNDINMSPFSSSQTRAN 180
           QELSQFSNENSELPVNGYVTPGLHGRSAIYRMSCSPFFKGPSSSNDINMSPFSSSQTRAN
Sbjct: 121 QELSQFSNENSELPVNGYVTPGLHGRSAIYRMSCSPFFKGPSSSNDINMSPFSSSQTRAN 180

Query: 181 SLVSGCRQVLKRRGAELENELGSIGPIRRIRQKSNMMSTFRDARSSPRGNFLPSRTIGSD 240
           SLVSGCRQVLKRRGAELENELGSIGPIRRIRQKSNMMSTFRDARSSPRGNFLPSRTIGSD
Sbjct: 181 SLVSGCRQVLKRRGAELENELGSIGPIRRIRQKSNMMSTFRDARSSPRGNFLPSRTIGSD 240

Query: 241 LTDGGSPIRDSPSSKRLLLGTGQSVEPAEARRNDEDGKISSDNVLAASPQSNKMAEKIFE 300
           LTDGGSPIRDSPSSKRLLLGTGQSVEPAEARRNDEDGKISSDNVLAASPQSNKMAEKIFE
Sbjct: 241 LTDGGSPIRDSPSSKRLLLGTGQSVEPAEARRNDEDGKISSDNVLAASPQSNKMAEKIFE 300

Query: 301 QLNIIVPSPKEKLSLPQFAAGNASCSMSKQPVRQGNEPNGTSDPSSSQKFQPMDSVKHSL 360
           QLNIIVPSPKEKLSLPQFAAGNASCSMSKQPVRQGNEPNGTSDPSSSQKFQPMDSVKHSL
Sbjct: 301 QLNIIVPSPKEKLSLPQFAAGNASCSMSKQPVRQGNEPNGTSDPSSSQKFQPMDSVKHSL 360

Query: 361 DPELNGSPSSKDKLRKDGSSKLLSHSFKDLGNKDIRSDNXXXXXXXXXXXXKPGFKMAVF 420
           DPELNGSPSSKDKLRKDGSSKLLSHSFKDLGNKDIRSDN            KPGFKMAVF
Sbjct: 361 DPELNGSPSSKDKLRKDGSSKLLSHSFKDLGNKDIRSDNVALSSVAATTSSKPGFKMAVF 420

Query: 421 EDLPEFDDDQEAPIPSKNSMGKTEVKTTDKKIDLKKEQKVEPILFKQKVESNSVQKAVSS 480
           EDLPEFDDDQEAPIPSKNSMGKTEVKTTDKKIDLKKEQKVEPILFKQKVESNSVQKAVSS
Sbjct: 421 EDLPEFDDDQEAPIPSKNSMGKTEVKTTDKKIDLKKEQKVEPILFKQKVESNSVQKAVSS 480

Query: 481 PVSEKPIASALKDARPLGLFSPNDPENRATHDVPSDNNNGFKFPHVPSGTLLESSVSQLP 540
           PVSEKPIASALKDARPLGLFSPNDPENRATHDVPSDNNNGFKFPHVPSGTLLESSVSQLP
Sbjct: 481 PVSEKPIASALKDARPLGLFSPNDPENRATHDVPSDNNNGFKFPHVPSGTLLESSVSQLP 540

Query: 541 LASNKDDKLISASSSIFGLKQSSTPDSEQTNTADVKTEARLGESVTKPTTLDITNLEGGN 600
           LASNKDDKLISASSSIFGLKQSSTPDSEQTNTADVKTEARLGESVTKPTTLDITNLEGGN
Sbjct: 541 LASNKDDKLISASSSIFGLKQSSTPDSEQTNTADVKTEARLGESVTKPTTLDITNLEGGN 600

Query: 601 ERERTEDVHKSSDKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVTPIDKPEVSLA 660
           ERERTEDVHKSSDKV                                NVTPIDKPEVSLA
Sbjct: 601 ERERTEDVHKSSDKVLPSAAPFHFASAASTTASLSNGFSLPSSSKLSNVTPIDKPEVSLA 660

Query: 661 XXXXXXXXXXXXXXXXXXXXXXXXXXFNFGSSTSMVAATKSDSTNTVAKPASSLLFGTGD 720
                                     FNFGSSTSMVAATKSDSTNTVAKPASSLLFGTGD
Sbjct: 661 PSTVSTTFAPSSTSPPVSSPIPAIPTFNFGSSTSMVAATKSDSTNTVAKPASSLLFGTGD 720

Query: 721 AIAEAKSTAQDTANKASSNLTSNDGIXXXXXXXXXXXXXXXXXXXXXXXXXPAQPAGFST 780
           AIAEAKSTAQDTANKASSNLTSNDGI                         PAQPAGFST
Sbjct: 721 AIAEAKSTAQDTANKASSNLTSNDGIASTTSASTAPFTFSSSGNNTFGFNSPAQPAGFST 780

Query: 781 SVDGSTTQPSATSTIFGSKLPQSEGTMSQPSKSSPVQFSSPFQ 823
           SVDGSTTQPSATSTIFGSKLPQSEGTMSQPSKSSPVQFSSPFQ
Sbjct: 781 SVDGSTTQPSATSTIFGSKLPQSEGTMSQPSKSSPVQFSSPFQ 823




 Score =  164 bits (414), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 88/137 (64%), Positives = 88/137 (64%)

Query: 1048 TSASMNSSTPQPAFGMTNANTSFGMGSPGNDQMNVEDSMADDTNQAAPAPAPIFGSSPFG 1107
            TSASMNSSTPQPAFGMTNANTSFGMGSPGNDQMNVEDSMADDTNQAAPAPAPIFGSSPFG
Sbjct: 1048 TSASMNSSTPQPAFGMTNANTSFGMGSPGNDQMNVEDSMADDTNQAAPAPAPIFGSSPFG 1107

Query: 1108 QXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAAFPPAGGSLEFQXXXXXXXXXXXXX 1167
            Q                                NAAFPPAGGSLEFQ             
Sbjct: 1108 QPASSPAAPVFGAPAVPSAGVFQFGGQQGSMQQNAAFPPAGGSLEFQGGNFSLGSGGGGG 1167

Query: 1168 XXXXRRVIKVKRNPKKR 1184
                RRVIKVKRNPKKR
Sbjct: 1168 DKSSRRVIKVKRNPKKR 1184



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.307    0.124    0.341 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 28,776,008
Number of extensions: 1159986
Number of successful extensions: 3034
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 3028
Number of HSP's successfully gapped: 2
Length of query: 1184
Length of database: 17,035,801
Length adjustment: 112
Effective length of query: 1072
Effective length of database: 11,187,833
Effective search space: 11993356976
Effective search space used: 11993356976
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 162 (67.0 bits)