BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0786400 Os03g0786400|AK067369
         (295 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0786400  Zinc finger, C2H2-type domain containing protein    250   1e-66
Os07g0153600                                                       79   3e-15

>Os03g0786400 Zinc finger, C2H2-type domain containing protein
          Length = 295

 Score =  250 bits (638), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 140/252 (55%), Positives = 140/252 (55%)

Query: 1   MAAQAADLSLTLAPXXXXXXXXXXXXXXXXXXACIDGKDVRLFPCLFCNKKFLKSQALGG 60
           MAAQAADLSLTLAP                  ACIDGKDVRLFPCLFCNKKFLKSQALGG
Sbjct: 1   MAAQAADLSLTLAPSGGGGGGGGGGGGGGSSSACIDGKDVRLFPCLFCNKKFLKSQALGG 60

Query: 61  HQNAHKKERSIGWNPYFYMXXXXXXXXXXXXXXXXXXXXXMSSVTTPSGSYXXXXXXXXX 120
           HQNAHKKERSIGWNPYFYM                     MSSVTTPSGSY         
Sbjct: 61  HQNAHKKERSIGWNPYFYMPPTPHPAGNAAAAAAAATPGGMSSVTTPSGSYGVVGGAAVG 120

Query: 121 XXXXXXXXXXXXXXLLPXXXXXXXXXXXVPTSFPIAXXXXXXXXXXXLQYYXXXXXXXXX 180
                         LLP           VPTSFPIA           LQYY         
Sbjct: 121 ATAGVGGGGGVGGGLLPAHAYAGHGYAAVPTSFPIASHSSSVVGSGGLQYYAGTDCGAAA 180

Query: 181 XXXXXXXXXXXXXXXXXXXSESGVQVPRFATHQHHLLAVVSSGRAMLAAPDQPGAGRDDM 240
                              SESGVQVPRFATHQHHLLAVVSSGRAMLAAPDQPGAGRDDM
Sbjct: 181 AGAAKTTTTAAAAATAVAGSESGVQVPRFATHQHHLLAVVSSGRAMLAAPDQPGAGRDDM 240

Query: 241 IDMLNWRRGSHG 252
           IDMLNWRRGSHG
Sbjct: 241 IDMLNWRRGSHG 252



>Os07g0153600 
          Length = 167

 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 35/48 (72%), Positives = 37/48 (77%), Gaps = 2/48 (4%)

Query: 33 ACIDGKDVRLFPCLFCNKKFLKSQALGGHQNAHKKERSIG--WNPYFY 78
          A +DGK VRLFPCLFC K F KSQALGGHQNAH+KER  G  WNP  Y
Sbjct: 37 AIVDGKQVRLFPCLFCAKTFRKSQALGGHQNAHRKERVAGGSWNPNVY 84



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.134    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,678,262
Number of extensions: 121752
Number of successful extensions: 389
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 385
Number of HSP's successfully gapped: 2
Length of query: 295
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 195
Effective length of database: 11,814,401
Effective search space: 2303808195
Effective search space used: 2303808195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)