BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0775700 Os03g0775700|AK067093
         (943 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0775700  Conserved hypothetical protein                     1856   0.0  

>Os03g0775700 Conserved hypothetical protein
          Length = 943

 Score = 1856 bits (4808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 903/943 (95%), Positives = 903/943 (95%)

Query: 1   MAKVPDLGSDFAQKXXXXXXXXXXXXGFDSPAPPQRTSSSNAAVLPRDXXXXXXXXXXXX 60
           MAKVPDLGSDFAQK            GFDSPAPPQRTSSSNAAVLPRD            
Sbjct: 1   MAKVPDLGSDFAQKLLLDLRRRRERLGFDSPAPPQRTSSSNAAVLPRDSHSSSQRPHRSQ 60

Query: 61  XXXXXXXXXXXXXXXXNRSHPQSGNAIAGAGKPRHRATPVANSHQIVPFQGGGSAKQKPA 120
                           NRSHPQSGNAIAGAGKPRHRATPVANSHQIVPFQGGGSAKQKPA
Sbjct: 61  KPQQAAPRAGRAEATANRSHPQSGNAIAGAGKPRHRATPVANSHQIVPFQGGGSAKQKPA 120

Query: 121 NSSIDVQMALAIALSNRGKLQNIELVSRNGSIFFRDTDHAMPESHLVSPSAHVGKVAIGV 180
           NSSIDVQMALAIALSNRGKLQNIELVSRNGSIFFRDTDHAMPESHLVSPSAHVGKVAIGV
Sbjct: 121 NSSIDVQMALAIALSNRGKLQNIELVSRNGSIFFRDTDHAMPESHLVSPSAHVGKVAIGV 180

Query: 181 KKLNDILMVYSSGGGARDTGRRSSVDIGRELFGGAMDLEESLSMLVMLQEASDYMEGSGN 240
           KKLNDILMVYSSGGGARDTGRRSSVDIGRELFGGAMDLEESLSMLVMLQEASDYMEGSGN
Sbjct: 181 KKLNDILMVYSSGGGARDTGRRSSVDIGRELFGGAMDLEESLSMLVMLQEASDYMEGSGN 240

Query: 241 GKVLLLEGKENLKNSARSPSSARLVEIVDEDSEAEQAKNSKSLSMQIVPHKNSQGFSTPN 300
           GKVLLLEGKENLKNSARSPSSARLVEIVDEDSEAEQAKNSKSLSMQIVPHKNSQGFSTPN
Sbjct: 241 GKVLLLEGKENLKNSARSPSSARLVEIVDEDSEAEQAKNSKSLSMQIVPHKNSQGFSTPN 300

Query: 301 SSSVLQVSTVTGNNSRSNSSKADKDDAKVRMPNVIAKLMGLDNLPSTKVANKGMEKFVKP 360
           SSSVLQVSTVTGNNSRSNSSKADKDDAKVRMPNVIAKLMGLDNLPSTKVANKGMEKFVKP
Sbjct: 301 SSSVLQVSTVTGNNSRSNSSKADKDDAKVRMPNVIAKLMGLDNLPSTKVANKGMEKFVKP 360

Query: 361 EALSRKDRRTNLVGGRLPIQIIGSERVSSKGHNMNLLPGEWKIGLKNYEVYKSANLQVSN 420
           EALSRKDRRTNLVGGRLPIQIIGSERVSSKGHNMNLLPGEWKIGLKNYEVYKSANLQVSN
Sbjct: 361 EALSRKDRRTNLVGGRLPIQIIGSERVSSKGHNMNLLPGEWKIGLKNYEVYKSANLQVSN 420

Query: 421 SSSIPAADKQTRQTMRQMLSKMENAERRGSLGQQLHEEKKLTEETNQQKVANVGCRTDAG 480
           SSSIPAADKQTRQTMRQMLSKMENAERRGSLGQQLHEEKKLTEETNQQKVANVGCRTDAG
Sbjct: 421 SSSIPAADKQTRQTMRQMLSKMENAERRGSLGQQLHEEKKLTEETNQQKVANVGCRTDAG 480

Query: 481 KKMDFLKRIRKISGSRQVTEEKHIIQEESTTGKKQTTSMKQLLGTDSEDKSKITRVKFNK 540
           KKMDFLKRIRKISGSRQVTEEKHIIQEESTTGKKQTTSMKQLLGTDSEDKSKITRVKFNK
Sbjct: 481 KKMDFLKRIRKISGSRQVTEEKHIIQEESTTGKKQTTSMKQLLGTDSEDKSKITRVKFNK 540

Query: 541 ENLATTEIKNAARGKNGKTDQRKRQSYNKQTDVHSMPKKSQKYREMKSKEGIQNLEHKRS 600
           ENLATTEIKNAARGKNGKTDQRKRQSYNKQTDVHSMPKKSQKYREMKSKEGIQNLEHKRS
Sbjct: 541 ENLATTEIKNAARGKNGKTDQRKRQSYNKQTDVHSMPKKSQKYREMKSKEGIQNLEHKRS 600

Query: 601 TKSEATQLKILPYTAEIQQENGKHEEDNDIVKPSDSHGDGGISEQFAGMVEDSRTTGMAS 660
           TKSEATQLKILPYTAEIQQENGKHEEDNDIVKPSDSHGDGGISEQFAGMVEDSRTTGMAS
Sbjct: 601 TKSEATQLKILPYTAEIQQENGKHEEDNDIVKPSDSHGDGGISEQFAGMVEDSRTTGMAS 660

Query: 661 PDQFMKQITEVTSIDVHASDRSNVVDQSVTQTNDDTSSNTASETTQTPETFTEGEHHQNL 720
           PDQFMKQITEVTSIDVHASDRSNVVDQSVTQTNDDTSSNTASETTQTPETFTEGEHHQNL
Sbjct: 661 PDQFMKQITEVTSIDVHASDRSNVVDQSVTQTNDDTSSNTASETTQTPETFTEGEHHQNL 720

Query: 721 QLVEFKEKPLDDLGDAKETSNPTDLQDQKMHVVSCDSFTENQLLLMRMLLKDQYLLETAK 780
           QLVEFKEKPLDDLGDAKETSNPTDLQDQKMHVVSCDSFTENQLLLMRMLLKDQYLLETAK
Sbjct: 721 QLVEFKEKPLDDLGDAKETSNPTDLQDQKMHVVSCDSFTENQLLLMRMLLKDQYLLETAK 780

Query: 781 ALVRNPVPVHFVNASADRWSEKGSSLFSDIAREVIRKKGKRTEAIVEVSMANTTNMKLQY 840
           ALVRNPVPVHFVNASADRWSEKGSSLFSDIAREVIRKKGKRTEAIVEVSMANTTNMKLQY
Sbjct: 781 ALVRNPVPVHFVNASADRWSEKGSSLFSDIAREVIRKKGKRTEAIVEVSMANTTNMKLQY 840

Query: 841 LDDLIMELDGDIESLNISKKSQHLGEDCTAENLRMILHRDMQNNHPDANSMWDFGWNRIS 900
           LDDLIMELDGDIESLNISKKSQHLGEDCTAENLRMILHRDMQNNHPDANSMWDFGWNRIS
Sbjct: 841 LDDLIMELDGDIESLNISKKSQHLGEDCTAENLRMILHRDMQNNHPDANSMWDFGWNRIS 900

Query: 901 DLPIERNEVVRDLEKNILGGMITDVARELIELSVRHGCCACEA 943
           DLPIERNEVVRDLEKNILGGMITDVARELIELSVRHGCCACEA
Sbjct: 901 DLPIERNEVVRDLEKNILGGMITDVARELIELSVRHGCCACEA 943



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.310    0.126    0.343 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 29,059,921
Number of extensions: 1195007
Number of successful extensions: 3394
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 3393
Number of HSP's successfully gapped: 1
Length of query: 943
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 833
Effective length of database: 11,292,261
Effective search space: 9406453413
Effective search space used: 9406453413
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 161 (66.6 bits)