BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0774200 Os03g0774200|AK119532
         (223 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0774200  Similar to NADH-ubiquinone oxidoreductase subu...   358   2e-99

>Os03g0774200 Similar to NADH-ubiquinone oxidoreductase subunit 8 (EC 1.6.5.3)
          Length = 223

 Score =  358 bits (918), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 174/202 (86%), Positives = 174/202 (86%)

Query: 22  GPSATAMQGHIRTYMGAGKPTRFXXXXXXXXXXXXXXXXWNAVFERSINTLFLTEMVRGL 81
           GPSATAMQGHIRTYMGAGKPTRF                WNAVFERSINTLFLTEMVRGL
Sbjct: 22  GPSATAMQGHIRTYMGAGKPTRFKEDEEKEKLAKEIAKDWNAVFERSINTLFLTEMVRGL 81

Query: 82  MLTLKYFFEKNVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAICPAQAITI 141
           MLTLKYFFEKNVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAICPAQAITI
Sbjct: 82  MLTLKYFFEKNVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAICPAQAITI 141

Query: 142 EAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHXXXXXXXXXX 201
           EAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETH          
Sbjct: 142 EAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKL 201

Query: 202 XXNGDRWETEIAANLESESLYR 223
             NGDRWETEIAANLESESLYR
Sbjct: 202 LENGDRWETEIAANLESESLYR 223



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.137    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,889,073
Number of extensions: 216064
Number of successful extensions: 351
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 348
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 126
Effective length of database: 11,971,043
Effective search space: 1508351418
Effective search space used: 1508351418
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)