BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0769600 Os03g0769600|AK100054
(564 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0769600 ResB-like family protein 996 0.0
>Os03g0769600 ResB-like family protein
Length = 564
Score = 996 bits (2575), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/564 (87%), Positives = 496/564 (87%)
Query: 1 MPSPTCYLLLNPTASRSHHXXXXXXXXXXXXXXXVHVSCDARRTXXXXXXXXVKREAIPA 60
MPSPTCYLLLNPTASRSHH VHVSCDARRT VKREAIPA
Sbjct: 1 MPSPTCYLLLNPTASRSHHRPRLPLPAAAPPRRRVHVSCDARRTGGGGGGGGVKREAIPA 60
Query: 61 GTGKAKKQVVFFDAAPPVSQRXXXXXXXXXXXXXXXXKVARRKENAALGXXXXXXXXXXX 120
GTGKAKKQVVFFDAAPPVSQR KVARRKENAALG
Sbjct: 61 GTGKAKKQVVFFDAAPPVSQRGGGGGGEGEGEGEGEGKVARRKENAALGLVRRLTKRTLS 120
Query: 121 XXXXXPLAISEMFAIAALMALGTVIDQGEAPSYYFEKFPEDNPVFGFITWRWILTPGFDH 180
PLAISEMFAIAALMALGTVIDQGEAPSYYFEKFPEDNPVFGFITWRWILTPGFDH
Sbjct: 121 LLSNLPLAISEMFAIAALMALGTVIDQGEAPSYYFEKFPEDNPVFGFITWRWILTPGFDH 180
Query: 181 MFSSPVFXXXXXXXXXXXXXCTYTTQIPIVKVARRWSFMHSAGSIRKQEFAESLPRASIQ 240
MFSSPVF CTYTTQIPIVKVARRWSFMHSAGSIRKQEFAESLPRASIQ
Sbjct: 181 MFSSPVFLGLLALLAASLMACTYTTQIPIVKVARRWSFMHSAGSIRKQEFAESLPRASIQ 240
Query: 241 DLGVILMGYGYEVFTKGPSLYAFKGLAGRFAPIGVHIAMIFIMAGATLSATGSFKGSVDV 300
DLGVILMGYGYEVFTKGPSLYAFKGLAGRFAPIGVHIAMIFIMAGATLSATGSFKGSVDV
Sbjct: 241 DLGVILMGYGYEVFTKGPSLYAFKGLAGRFAPIGVHIAMIFIMAGATLSATGSFKGSVDV 300
Query: 301 PQGLNFVIGDVMKPKGVLSFVPDVFNTEVHVNRFYMEYYDSGEVSQFYSDLSLFDLDGKE 360
PQGLNFVIGDVMKPKGVLSFVPDVFNTEVHVNRFYMEYYDSGEVSQFYSDLSLFDLDGKE
Sbjct: 301 PQGLNFVIGDVMKPKGVLSFVPDVFNTEVHVNRFYMEYYDSGEVSQFYSDLSLFDLDGKE 360
Query: 361 VMRKTIKVNDPLRYGGVTIYQTDWGFSALQVKKNGEGPFNLAMAPLKLNGDKKLFGTLLP 420
VMRKTIKVNDPLRYGGVTIYQTDWGFSALQVKKNGEGPFNLAMAPLKLNGDKKLFGTLLP
Sbjct: 361 VMRKTIKVNDPLRYGGVTIYQTDWGFSALQVKKNGEGPFNLAMAPLKLNGDKKLFGTLLP 420
Query: 421 LENSGSSNVKGISMLARDLQSIVLYDQEGKFVGVRRPSSKLPIEIDGNEIVIEDAIGSTG 480
LENSGSSNVKGISMLARDLQSIVLYDQEGKFVGVRRPSSKLPIEIDGNEIVIEDAIGSTG
Sbjct: 421 LENSGSSNVKGISMLARDLQSIVLYDQEGKFVGVRRPSSKLPIEIDGNEIVIEDAIGSTG 480
Query: 481 LDLKTDPGIPIVYAGFGALMLTTCISYLSHSQIWALQDGSTVVIGGKTNRAKLEFSEEMN 540
LDLKTDPGIPIVYAGFGALMLTTCISYLSHSQIWALQDGSTVVIGGKTNRAKLEFSEEMN
Sbjct: 481 LDLKTDPGIPIVYAGFGALMLTTCISYLSHSQIWALQDGSTVVIGGKTNRAKLEFSEEMN 540
Query: 541 RLLDKVPELISVNEKKIDSKQSAT 564
RLLDKVPELISVNEKKIDSKQSAT
Sbjct: 541 RLLDKVPELISVNEKKIDSKQSAT 564
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.137 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,319,746
Number of extensions: 633697
Number of successful extensions: 1057
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1055
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 458
Effective length of database: 11,501,117
Effective search space: 5267511586
Effective search space used: 5267511586
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)