BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0766000 Os03g0766000|AK108254
         (134 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0766000  10 kDa prolamin precursor                           139   8e-34
Os03g0766100  Plant lipid transfer/seed storage/trypsin-alph...    92   1e-19
Os11g0535525  Similar to 10 kDa prolamin precursor                 71   3e-13

>Os03g0766000 10 kDa prolamin precursor
          Length = 134

 Score =  139 bits (349), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 79/134 (58%), Positives = 79/134 (58%)

Query: 1   MAAYTSKXXXXXXXXXXXXXXXXXXXXMQYFPPTLAMGTMDPCRQYMMQTLGMGSSTAMF 60
           MAAYTSK                    MQYFPPTLAMGTMDPCRQYMMQTLGMGSSTAMF
Sbjct: 1   MAAYTSKIFALFALIALSASATTAITTMQYFPPTLAMGTMDPCRQYMMQTLGMGSSTAMF 60

Query: 61  MSXXXXXXXXXXXXXXXXXXXXXHCGTSCQMMQSMQQVICAGLGXXXXXXXXXXXXXXCN 120
           MS                     HCGTSCQMMQSMQQVICAGLG              CN
Sbjct: 61  MSQPMALLQQQCCMQLQGMMPQCHCGTSCQMMQSMQQVICAGLGQQQMMKMAMQMPYMCN 120

Query: 121 MAPVNFQLSSCGCC 134
           MAPVNFQLSSCGCC
Sbjct: 121 MAPVNFQLSSCGCC 134



>Os03g0766100 Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor
           domain containing protein
          Length = 134

 Score = 91.7 bits (226), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/106 (50%), Positives = 57/106 (53%), Gaps = 1/106 (0%)

Query: 30  YFPPTLAMGTMDPCRQYMMQTLGMGSSTAMFMSXXXXXXXXXXXXXXXXXXXXXHCGTSC 89
           YFP TLAMGTM+PC+ YMMQTLGMGS   MFMS                     HCG SC
Sbjct: 29  YFPSTLAMGTMNPCKLYMMQTLGMGSYATMFMSQPIALLQQQCCMQLQGMIPQCHCGASC 88

Query: 90  QMMQSMQQVICAGLGXXXXXXXXXXXX-XXCNMAPVNFQLSSCGCC 134
           QMMQ+MQ  IC GLG               CNMAP NFQL   GCC
Sbjct: 89  QMMQNMQNAICGGLGQQQMMMKMVMQLPYVCNMAPANFQLFPYGCC 134



>Os11g0535525 Similar to 10 kDa prolamin precursor
          Length = 88

 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/62 (59%), Positives = 39/62 (62%)

Query: 1  MAAYTSKXXXXXXXXXXXXXXXXXXXXMQYFPPTLAMGTMDPCRQYMMQTLGMGSSTAMF 60
          MAAYT+K                    MQYFP TLAMGT DP RQYMMQTLGMGSSTAMF
Sbjct: 1  MAAYTTKIFALFALIALSASATTAITTMQYFPATLAMGTTDPYRQYMMQTLGMGSSTAMF 60

Query: 61 MS 62
          +S
Sbjct: 61 IS 62



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.328    0.130    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,356,073
Number of extensions: 40088
Number of successful extensions: 67
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 3
Length of query: 134
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 44
Effective length of database: 12,336,541
Effective search space: 542807804
Effective search space used: 542807804
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 150 (62.4 bits)