Os03g0766000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : 10 kDa prolamin precursor.
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Os03g0766000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : 10 kDa prolamin precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.78 | 0.328 | 10.3 | 0.405 | 0.263 | 0.54 | 0.405 | -1.03 | 0.219 | 23.3 | 19.6 | 2781 | -- | -- |
| 49.97 | 0.329 | 10.3 | 0.55 | 0.262 | 0.796 | 0.448 | -- | 0.254 | 23 | 19.1 | 2723 | -- | -- |
| 49.42 | 0.327 | 10.3 | 0.386 | 0.268 | 0.541 | -- | -1.05 | 0.216 | 23.5 | 19.61 | 2888 | -- | -- |
| 50.64 | 0.331 | 10.3 | 0.499 | 0.275 | 0.868 | -- | -- | 0.258 | 23.5 | 18.7 | 2994 | -- | -- |
| 53.63 | 0.341 | 10.3 | 0.407 | -- | 0.564 | -- | -0.917 | 0.223 | -- | 19.6 | 2648 | -- | -- |
| 60.23 | 0.364 | 10.3 | 0.935 | 0.278 | -- | 0.379 | -- | 0.422 | 23.5 | -- | -- | -- | -- |
| 60.83 | 0.365 | 10.3 | 0.919 | 0.277 | -- | -- | -- | 0.42 | 23.8 | -- | -- | -- | -- |
| 54.62 | 0.344 | 10.3 | 0.536 | -- | 0.792 | -- | -- | 0.261 | -- | 19.3 | 2576 | -- | -- |
| 54.02 | 0.342 | 10.3 | -- | 0.275 | 0.918 | -- | -- | 0.216 | 23.8 | 18.8 | 21699 | -- | -- |
| 65.65 | 0.379 | 10.3 | 0.927 | -- | -- | -- | -- | 0.424 | -- | -- | -- | -- | -- |
| 83.1 | 0.426 | 10.3 | -- | 0.288 | -- | -- | -- | 0.318 | 24 | -- | -- | -- | -- |
| 56.73 | 0.351 | 10.3 | -- | -- | 0.982 | -- | -- | 0.148 | -- | 17.2 | 24290 | -- | -- |
| 88.34 | 0.439 | 10.3 | -- | -- | -- | -- | -- | 0.321 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.41 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 2 | 47.56 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 3 | 47.93 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 4 | 48.04 | wind | 1 | 14400 | < th | dose independent | rect. | 23 | 3 |
| 5 | 48.07 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 6 |
| 7 | 48.08 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 9 |
| 11 | 48.09 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 14 |
| 15 | 48.11 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 9 |
| 19 | 48.21 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 9 |
| 20 | 48.23 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 21 | 48.24 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 31 | 48.32 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 5 |
| 63 | 48.43 | radiation | 10 | 1440 | < th | dose independent | sin | 16 | NA |
| 64 | 48.44 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 6 |
| 76 | 48.48 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 78 | 48.48 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 79 | 48.49 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 2 |
| 88 | 48.53 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 92 | 48.56 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 5 |
| 121 | 48.73 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 139 | 48.81 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 5 |
| 155 | 48.85 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 196 | 48.95 | wind | 1 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 197 | 48.95 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 201 | 48.97 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 209 | 49.01 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 324 | 49.44 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 332 | 49.47 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 340 | 49.48 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 368 | 49.58 | humidity | 60 | 43200 | < th | dose dependent | rect. | 20 | 13 |
| 384 | 49.65 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 385 | 49.66 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 397 | 49.69 | radiation | 40 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 428 | 49.75 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 434 | 49.75 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 439 | 49.77 | radiation | 10 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 443 | 49.78 | humidity | 50 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 445 | 49.80 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 493 | 49.91 | humidity | 50 | 43200 | < th | dose independent | rect. | 19 | 14 |
| 531 | 49.98 | humidity | 50 | 43200 | < th | dose independent | rect. | 21 | 12 |
| 578 | 50.08 | humidity | 50 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 589 | 50.10 | humidity | 50 | 43200 | < th | dose independent | rect. | 4 | 5 |
| 614 | 50.14 | wind | 1 | 14400 | < th | dose dependent | rect. | 23 | 3 |
| 616 | 50.14 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 21 |
| 633 | 50.17 | humidity | 50 | 43200 | > th | dose independent | rect. | 21 | 12 |
| 636 | 50.17 | humidity | 50 | 43200 | > th | dose independent | rect. | 19 | 14 |
| 637 | 50.17 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 639 | 50.17 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 14 |
| 704 | 50.27 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 715 | 50.28 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 19 |
| 717 | 50.29 | humidity | 50 | 43200 | > th | dose independent | rect. | 1 | 8 |
| 736 | 50.31 | radiation | 10 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 740 | 50.33 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 816 | 50.38 | radiation | 10 | 1440 | < th | dose dependent | sin | 21 | NA |
| 838 | 50.40 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 940 | 50.51 | wind | 7 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 941 | 50.51 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 6 |
| 977 | 50.55 | temperature | 10 | 43200 | < th | dose dependent | rect. | 2 | 1 |