BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0761700 Os03g0761700|AK068309
         (505 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0761700  Heat shock protein DnaJ family protein              973   0.0  

>Os03g0761700 Heat shock protein DnaJ family protein
          Length = 505

 Score =  973 bits (2516), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/484 (96%), Positives = 469/484 (96%)

Query: 22  PLPLAWRGRPVSTAARDDELAGKSAYEVLGVGETSSSAEIKASFHRLAKETHPDVAAAAG 81
           PLPLAWRGRPVSTAARDDELAGKSAYEVLGVGETSSSAEIKASFHRLAKETHPDVAAAAG
Sbjct: 22  PLPLAWRGRPVSTAARDDELAGKSAYEVLGVGETSSSAEIKASFHRLAKETHPDVAAAAG 81

Query: 82  SSRFLQILAAYEILSDSQRRAHYDIYLRSQKRVLQKHPRPSHHVYPNPSGSGIVVTRESN 141
           SSRFLQILAAYEILSDSQRRAHYDIYLRSQKRVLQKHPRPSHHVYPNPSGSGIVVTRESN
Sbjct: 82  SSRFLQILAAYEILSDSQRRAHYDIYLRSQKRVLQKHPRPSHHVYPNPSGSGIVVTRESN 141

Query: 142 VVEWLKWYRLTIDDIVTKKRVATGSGYFDKLESELYTAIHAAYYGPDVRSVDLLPDCFEA 201
           VVEWLKWYRLTIDDIVTKKRVATGSGYFDKLESELYTAIHAAYYGPDVRSVDLLPDCFEA
Sbjct: 142 VVEWLKWYRLTIDDIVTKKRVATGSGYFDKLESELYTAIHAAYYGPDVRSVDLLPDCFEA 201

Query: 202 EERSVYETPELLHLVSGRDLFGIVSLADRVQQLPDAFQEKQTLPGFKTYGISQHVSTNLE 261
           EERSVYETPELLHLVSGRDLFGIVSLADRVQQLPDAFQEKQTLPGFKTYGISQHVSTNLE
Sbjct: 202 EERSVYETPELLHLVSGRDLFGIVSLADRVQQLPDAFQEKQTLPGFKTYGISQHVSTNLE 261

Query: 262 KGTVHASPVYIHKREIDKNDGPHSDAYKDIELWICGKLVATATRSPKCNCIDKSDVEDHI 321
           KGTVHASPVYIHKREIDKNDGPHSDAYKDIELWICGKLVATATRSPKCNCIDKSDVEDHI
Sbjct: 262 KGTVHASPVYIHKREIDKNDGPHSDAYKDIELWICGKLVATATRSPKCNCIDKSDVEDHI 321

Query: 322 HVFLVPNEVASSDFTQELPXXXXXXXXXXXXXXXSCCVYDSRGIKTHLIVKHRTLMVKHM 381
           HVFLVPNEVASSDFTQELP               SCCVYDSRGIKTHLIVKHRTLMVKHM
Sbjct: 322 HVFLVPNEVASSDFTQELPILGTITGLATTGEEGSCCVYDSRGIKTHLIVKHRTLMVKHM 381

Query: 382 HWYQVGDEISPCECRCSRARLPPSRYWLFEPRCYMHDTGGWYIETFGRDKKGRKILSPRQ 441
           HWYQVGDEISPCECRCSRARLPPSRYWLFEPRCYMHDTGGWYIETFGRDKKGRKILSPRQ
Sbjct: 382 HWYQVGDEISPCECRCSRARLPPSRYWLFEPRCYMHDTGGWYIETFGRDKKGRKILSPRQ 441

Query: 442 WDGSNEHSERRLHPAMYLAALAYRSLDIEDAQRKKWSITTFLELQSSHICQLCKKIFNGG 501
           WDGSNEHSERRLHPAMYLAALAYRSLDIEDAQRKKWSITTFLELQSSHICQLCKKIFNGG
Sbjct: 442 WDGSNEHSERRLHPAMYLAALAYRSLDIEDAQRKKWSITTFLELQSSHICQLCKKIFNGG 501

Query: 502 KESS 505
           KESS
Sbjct: 502 KESS 505



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.134    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,560,643
Number of extensions: 762559
Number of successful extensions: 1797
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1832
Number of HSP's successfully gapped: 2
Length of query: 505
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 400
Effective length of database: 11,553,331
Effective search space: 4621332400
Effective search space used: 4621332400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)