BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0760100 Os03g0760100|Os03g0760100
         (228 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0760100  Conserved hypothetical protein                      334   3e-92
Os04g0270900  UDP-glucuronosyl/UDP-glucosyltransferase famil...   130   6e-31

>Os03g0760100 Conserved hypothetical protein
          Length = 228

 Score =  334 bits (857), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 179/228 (78%), Positives = 179/228 (78%)

Query: 1   MAFLGWAVDIARDSGASSSVVLTCDGYGSALYFSPWDSVPLPATASPDDGFLLPRFPDVC 60
           MAFLGWAVDIARDSGASSSVVLTCDGYGSALYFSPWDSVPLPATASPDDGFLLPRFPDVC
Sbjct: 1   MAFLGWAVDIARDSGASSSVVLTCDGYGSALYFSPWDSVPLPATASPDDGFLLPRFPDVC 60

Query: 61  VQRSQFTNHLAPANXXXXXXXXXXVKEEASEVSTGLGCLRPVRGRPAVXXXXXXXXXXXX 120
           VQRSQFTNHLAPAN          VKEEASEVSTGLGCLRPVRGRPAV            
Sbjct: 61  VQRSQFTNHLAPANGTGGGGSRTGVKEEASEVSTGLGCLRPVRGRPAVLGGGIRPRLPPP 120

Query: 121 XSHAAVXXXXXXXXXXXXXXXXXXXXXXXXXXVVLATDFEAICAPVGGGGALVPTLQDGQ 180
            SHAAV                          VVLATDFEAICAPVGGGGALVPTLQDGQ
Sbjct: 121 LSHAAVPRLPRRGGTPGTPPPCASPRRGRRRRVVLATDFEAICAPVGGGGALVPTLQDGQ 180

Query: 181 STGTTIRLHLDAIAATTKTSRSNLCPPPVLAASRATVSDSRSSWPELS 228
           STGTTIRLHLDAIAATTKTSRSNLCPPPVLAASRATVSDSRSSWPELS
Sbjct: 181 STGTTIRLHLDAIAATTKTSRSNLCPPPVLAASRATVSDSRSSWPELS 228



>Os04g0270900 UDP-glucuronosyl/UDP-glucosyltransferase family protein
          Length = 518

 Score =  130 bits (328), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 62/72 (86%), Positives = 66/72 (91%)

Query: 3   FLGWAVDIARDSGASSSVVLTCDGYGSALYFSPWDSVPLPATASPDDGFLLPRFPDVCVQ 62
           FLGWAVD+ARD+GASSS+VLTC GYGSALYFS WDSVPLPATASPDDGF LPRFPDV VQ
Sbjct: 140 FLGWAVDVARDAGASSSIVLTCGGYGSALYFSLWDSVPLPATASPDDGFPLPRFPDVRVQ 199

Query: 63  RSQFTNHLAPAN 74
           RSQ TNHLA A+
Sbjct: 200 RSQLTNHLAAAD 211



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.131    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,017,544
Number of extensions: 255057
Number of successful extensions: 760
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 762
Number of HSP's successfully gapped: 2
Length of query: 228
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 131
Effective length of database: 11,971,043
Effective search space: 1568206633
Effective search space used: 1568206633
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)