BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0755300 Os03g0755300|Os03g0755300
         (193 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0755300                                                      398   e-111
Os03g0753500  Protein of unknown function DUF1618 domain con...   323   3e-89
AK068421                                                          263   6e-71
Os03g0753400                                                      140   5e-34

>Os03g0755300 
          Length = 193

 Score =  398 bits (1022), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/193 (100%), Positives = 193/193 (100%)

Query: 1   MVWPASRCVLLDPGVPDYVFSIDQTKQGWASIDLKKKRYQGCGRYGPLLAESVKLYARLA 60
           MVWPASRCVLLDPGVPDYVFSIDQTKQGWASIDLKKKRYQGCGRYGPLLAESVKLYARLA
Sbjct: 1   MVWPASRCVLLDPGVPDYVFSIDQTKQGWASIDLKKKRYQGCGRYGPLLAESVKLYARLA 60

Query: 61  EEHPALSRLAVCADKNIIRDIVAEELKKKQAFKVADLPIRAIEFGNVDEISGVTARVEVA 120
           EEHPALSRLAVCADKNIIRDIVAEELKKKQAFKVADLPIRAIEFGNVDEISGVTARVEVA
Sbjct: 61  EEHPALSRLAVCADKNIIRDIVAEELKKKQAFKVADLPIRAIEFGNVDEISGVTARVEVA 120

Query: 121 DKNLMVLSLSFVFTSSKLKHYLLYDAIHASMSMIPIPNWCCDIYLPSNPLPVRYGDEHAL 180
           DKNLMVLSLSFVFTSSKLKHYLLYDAIHASMSMIPIPNWCCDIYLPSNPLPVRYGDEHAL
Sbjct: 121 DKNLMVLSLSFVFTSSKLKHYLLYDAIHASMSMIPIPNWCCDIYLPSNPLPVRYGDEHAL 180

Query: 181 VLFAKDYPYKRGG 193
           VLFAKDYPYKRGG
Sbjct: 181 VLFAKDYPYKRGG 193



>Os03g0753500 Protein of unknown function DUF1618 domain containing protein
          Length = 516

 Score =  323 bits (829), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 171/203 (84%), Positives = 178/203 (87%), Gaps = 12/203 (5%)

Query: 1   MVWPASRCVLLDPGVPDYVFSIDQTKQGWASIDLKKKRYQGCGRYGPLLAESVKLYARLA 60
           M  PASRCVLLDPGVPDYVFSI  T+QGWASIDLKKKRYQGCGRYGPLLAESVKLY RLA
Sbjct: 1   MASPASRCVLLDPGVPDYVFSIGPTEQGWASIDLKKKRYQGCGRYGPLLAESVKLYVRLA 60

Query: 61  EEHPALSRLAVCADKNIIRDIVAEELKKKQ----------AFKVADLPIRAIEFGNVDEI 110
           EEHPALSRLA+CADKNIIR+IVAEELKKK+             V DL IRAIEF  +DEI
Sbjct: 61  EEHPALSRLAICADKNIIRNIVAEELKKKKASKAAESSSPGLMVPDLAIRAIEFDKIDEI 120

Query: 111 SGVTARVEVADKNLMVLSLSFVFTSSKLKHYLLYDAIHASMSMIPIPNWCCDIYLPSNPL 170
           SGVTARVEVADKNLMVLSLSFVFTSS  KHYLLYDAIHASMSMIPIPNWCCDIYLPSNPL
Sbjct: 121 SGVTARVEVADKNLMVLSLSFVFTSS--KHYLLYDAIHASMSMIPIPNWCCDIYLPSNPL 178

Query: 171 PVRYGDEHALVLFAKDYPYKRGG 193
           PVRYGDE+ALVLFAK+YPYKR G
Sbjct: 179 PVRYGDEYALVLFAKNYPYKREG 201



>AK068421 
          Length = 529

 Score =  263 bits (672), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 137/161 (85%), Positives = 140/161 (86%), Gaps = 12/161 (7%)

Query: 43  GRYGPLLAESVKLYARLAEEHPALSRLAVCADKNIIRDIVAEELKKKQAFKVA------- 95
           GRYGPLLAESVKLYARLAEEHP LSRLAVCADKNII  IVAEELKKKQA K A       
Sbjct: 1   GRYGPLLAESVKLYARLAEEHPTLSRLAVCADKNIIHFIVAEELKKKQASKAAESSPPGL 60

Query: 96  ---DLPIRAIEFGNVDEISGVTARVEVADKNLMVLSLSFVFTSSKLKHYLLYDAIHASMS 152
              DL IRAIEF  +DEISGVTARVEVADKNLMVLSLSFVFTSSK  HYLLYDAIHASMS
Sbjct: 61  MVPDLAIRAIEFDKIDEISGVTARVEVADKNLMVLSLSFVFTSSK--HYLLYDAIHASMS 118

Query: 153 MIPIPNWCCDIYLPSNPLPVRYGDEHALVLFAKDYPYKRGG 193
           MIPIPNWCCDIYLPSNPLPVRYGDE+ALVLFAK+YPYKR G
Sbjct: 119 MIPIPNWCCDIYLPSNPLPVRYGDEYALVLFAKNYPYKREG 159



>Os03g0753400 
          Length = 500

 Score =  140 bits (354), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 81/187 (43%), Positives = 112/187 (59%), Gaps = 13/187 (6%)

Query: 9   VLLDPGVPDYVFSIDQTKQGWASIDLKKKRYQGCGRYGPLLAESVKLYARLAEEHPAL-- 66
           VLLDP V DY F I  T +GW  +D   K Y    +YG L+AE +KLY RLA+    L  
Sbjct: 17  VLLDPNVSDYRFCIGPTAKGWKVVDFTNKNYGAGKKYGQLMAECLKLYVRLADGDAGLDQ 76

Query: 67  SRLAVCADKNIIRDIVAEELKKKQAFKVADLPIRAIEFGNVDEISGVTARVEVADKNLMV 126
           S LA+ A+  +IR I+ EEL ++      DL         +   S VT  VE+ADKNL++
Sbjct: 77  SELAITANDGVIRSIIEEELTEQTGCLKMDL-------HGIVHASCVTGYVEIADKNLII 129

Query: 127 LSLSFVFTSSKLKHYLLYDAIHASMSMIP--IPNWCCDIYLPSNPLPVRYGDEHALVLFA 184
           L++S+ F  ++  +YL+YDA   S+SMIP    +  C  Y P +PLPVRYGDE+ LVLFA
Sbjct: 130 LAVSYSF--ARDNYYLIYDATLRSLSMIPHVSAHPYCQAYYPCDPLPVRYGDEYTLVLFA 187

Query: 185 KDYPYKR 191
           ++  Y++
Sbjct: 188 RNLEYQK 194



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.139    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,475,212
Number of extensions: 246564
Number of successful extensions: 532
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 525
Number of HSP's successfully gapped: 4
Length of query: 193
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 98
Effective length of database: 12,075,471
Effective search space: 1183396158
Effective search space used: 1183396158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 153 (63.5 bits)