Os03g0755300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os03g0755300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.39 | 0.276 | 13.1 | 1.44 | 0.518 | -0.549 | -0.94 | 1.06 | 0.619 | 16.5 | 21.9 | 1116 | -- | -- |
| 36.49 | 0.281 | 13.2 | 1.18 | 0.458 | -0.643 | -1.01 | -- | 0.548 | 16.3 | 21.3 | 1142 | -- | -- |
| 36.7 | 0.282 | 13.1 | 1.47 | 0.515 | -0.556 | -- | 1.17 | 0.625 | 16.7 | 22 | 1133 | -- | -- |
| 38.8 | 0.29 | 13.2 | 1.17 | 0.5 | -0.655 | -- | -- | 0.518 | 16.7 | 21.3 | 1087 | -- | -- |
| 50.44 | 0.331 | 13.1 | 1.47 | -- | -0.585 | -- | 1.21 | 0.638 | -- | 22.3 | 1147 | -- | -- |
| 49.32 | 0.329 | 13.2 | 0.908 | 0.55 | -- | -1.1 | -- | 0.361 | 16 | -- | -- | -- | -- |
| 52.78 | 0.34 | 13.2 | 0.894 | 0.546 | -- | -- | -- | 0.355 | 16.2 | -- | -- | -- | -- |
| 52.49 | 0.337 | 13.2 | 1.17 | -- | -0.727 | -- | -- | 0.541 | -- | 21.2 | 1129 | -- | -- |
| 68.96 | 0.387 | 13.2 | -- | 0.517 | -0.317 | -- | -- | 0.364 | 16.5 | 22.3 | 900 | -- | -- |
| 68.93 | 0.388 | 13.2 | 0.872 | -- | -- | -- | -- | 0.34 | -- | -- | -- | -- | -- |
| 73.85 | 0.402 | 13.2 | -- | 0.529 | -- | -- | -- | 0.255 | 16.2 | -- | -- | -- | -- |
| 82.74 | 0.424 | 13.2 | -- | -- | -0.362 | -- | -- | 0.355 | -- | 22.36 | 1028 | -- | -- |
| 88.99 | 0.44 | 13.2 | -- | -- | -- | -- | -- | 0.243 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.52 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 22 |
| 3 | 32.67 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 15 | 33.27 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 36 | 33.73 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 42 | 33.95 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 16 |
| 47 | 34.02 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 18 |
| 64 | 34.29 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 70 | 34.38 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 19 |
| 72 | 34.38 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 23 |
| 73 | 34.38 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 75 | 34.40 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 76 | 34.40 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 5 |
| 90 | 34.49 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 91 | 34.49 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 94 | 34.50 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 110 | 34.55 | temperature | 15 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 169 | 34.73 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 180 | 34.75 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 187 | 34.76 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 195 | 34.78 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 214 | 34.82 | temperature | 20 | 270 | > th | dose dependent | sin | 4 | NA |
| 285 | 34.94 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 319 | 34.99 | temperature | 15 | 1440 | > th | dose dependent | sin | 15 | NA |
| 340 | 35.02 | temperature | 30 | 1440 | < th | dose dependent | sin | 15 | NA |
| 344 | 35.02 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 19 |
| 362 | 35.05 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 17 |
| 452 | 35.18 | temperature | 10 | 270 | > th | dose dependent | sin | 5 | NA |
| 483 | 35.20 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 17 |
| 498 | 35.22 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 524 | 35.23 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 19 |
| 553 | 35.26 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 619 | 35.31 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 686 | 35.37 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 772 | 35.42 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 785 | 35.42 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 825 | 35.45 | temperature | 20 | 1440 | > th | dose dependent | rect. | 8 | 16 |
| 881 | 35.47 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 18 |
| 941 | 35.50 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |