BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0738000 Os03g0738000|AK112083
         (401 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0738000  Cytochrome cd1-nitrite reductase-like, C-termi...   778   0.0  
AK110547                                                           70   2e-12

>Os03g0738000 Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 domain
           containing protein
          Length = 401

 Score =  778 bits (2009), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/401 (93%), Positives = 376/401 (93%)

Query: 1   LRFXXXXXXXXXXXXXXXEYSWPQLRFDLPPRRLYHFAGQFRXXXXXXXXXXGNFLKGVK 60
           LRF               EYSWPQLRFDLPPRRLYHFAGQFR          GNFLKGVK
Sbjct: 1   LRFAGGGGDGGGGSGAGAEYSWPQLRFDLPPRRLYHFAGQFRSAAAAASASAGNFLKGVK 60

Query: 61  WSPDGSSFLTSCDDNSLRLFYLPEEAYSTEAEHPAEAAVGGEDSYGASIQVNEGEPVYDF 120
           WSPDGSSFLTSCDDNSLRLFYLPEEAYSTEAEHPAEAAVGGEDSYGASIQVNEGEPVYDF
Sbjct: 61  WSPDGSSFLTSCDDNSLRLFYLPEEAYSTEAEHPAEAAVGGEDSYGASIQVNEGEPVYDF 120

Query: 121 CWYPYMSVSDPATCVFATTSRDHPIHLWDATTGELRCTYRAYDAMDEITAALSISFNSTG 180
           CWYPYMSVSDPATCVFATTSRDHPIHLWDATTGELRCTYRAYDAMDEITAALSISFNSTG
Sbjct: 121 CWYPYMSVSDPATCVFATTSRDHPIHLWDATTGELRCTYRAYDAMDEITAALSISFNSTG 180

Query: 181 TKLFAGYNKAIRVFDVHRPGRDFEQHSLLKGCEGPTGIISSISFSPHNGMLAVGSYSQTT 240
           TKLFAGYNKAIRVFDVHRPGRDFEQHSLLKGCEGPTGIISSISFSPHNGMLAVGSYSQTT
Sbjct: 181 TKLFAGYNKAIRVFDVHRPGRDFEQHSLLKGCEGPTGIISSISFSPHNGMLAVGSYSQTT 240

Query: 241 AVYAESNMEPLYVLHGQLGGVTQVLFSKDGNYLYTGGRKDPYILCWDIRNTVDIVYKLYR 300
           AVYAESNMEPLYVLHGQLGGVTQVLFSKDGNYLYTGGRKDPYILCWDIRNTVDIVYKLYR
Sbjct: 241 AVYAESNMEPLYVLHGQLGGVTQVLFSKDGNYLYTGGRKDPYILCWDIRNTVDIVYKLYR 300

Query: 301 SSDTTNQRIHFDIEPCGRHLATGGQDGMVHIYDLQGGQWVTAFQAAADTVNGFAFHPYLP 360
           SSDTTNQRIHFDIEPCGRHLATGGQDGMVHIYDLQGGQWVTAFQAAADTVNGFAFHPYLP
Sbjct: 301 SSDTTNQRIHFDIEPCGRHLATGGQDGMVHIYDLQGGQWVTAFQAAADTVNGFAFHPYLP 360

Query: 361 LATTSSGHRRFGMEDEIEEELSLAGDENCCSVWKFSSLQEA 401
           LATTSSGHRRFGMEDEIEEELSLAGDENCCSVWKFSSLQEA
Sbjct: 361 LATTSSGHRRFGMEDEIEEELSLAGDENCCSVWKFSSLQEA 401



>AK110547 
          Length = 412

 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 115/272 (42%), Gaps = 35/272 (12%)

Query: 108 SIQVNEG--EPVYDFCWYPYMSVSDPATCVFATTSRDHPIHLW-------DATTGELRCT 158
           S+Q  EG  + V    W P          + AT  +D    +W       +AT G +  T
Sbjct: 68  SLQAFEGHQDAVLAVAWSPTQPD------LVATGGQDDKAFIWRVGQEAAEATGGSMATT 121

Query: 159 YRAYDAMDEITAALSISFNSTGTKLF-AGYNKAIRVFDVHRPGRDFEQHSLLKGCEGPTG 217
             A    D + AA   +FN+TG+ L  A  + ++RV+ V          S ++  EGP  
Sbjct: 122 ELAGHT-DTVVAA---AFNTTGSLLATASLDSSVRVWRV-------ADGSCVQAPEGPGD 170

Query: 218 IISSISFSPHNGMLAVGSYSQTTAVYAESNMEPLYVLHGQLGGVTQVLFSKDGNYLYT-G 276
            +  +++ P   +L  GS   T  ++       + V  G  G VT   F+ DG  + + G
Sbjct: 171 GVDWLAWHPKGDILLAGSEDFTMWMWLAQTGNCMQVFSGHSGPVTAGAFTPDGKLVVSVG 230

Query: 277 GRKDPYILCWDIRN---TVDIVYKLYRSSDTTNQRIHFDIEPCGRHLATGGQDGMVHIYD 333
           G  D  +  W+ +    TV +  + +     T   +H    P G  + TG QDG V + +
Sbjct: 231 GENDCSLRVWNPKTGECTVQLQGRPFHEDSITCLGVH----PDGSVVITGAQDGSVRVSN 286

Query: 334 LQGGQWVTAFQAAADTVNGFAFHPYLPLATTS 365
           +   + V + Q   D+V    F  +LPLA T+
Sbjct: 287 IHNSRIVASLQGHEDSVEAAGFSRHLPLAATA 318



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.136    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,072,194
Number of extensions: 593396
Number of successful extensions: 1547
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1552
Number of HSP's successfully gapped: 2
Length of query: 401
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 298
Effective length of database: 11,657,759
Effective search space: 3474012182
Effective search space used: 3474012182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)