Os03g0738000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 domain containing protein.
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Os03g0738000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 112.04 | 0.497 | 10.1 | 0.701 | 2.51 | -2.68 | -0.385 | -0.382 | -0.121 | 17.4 | 29.7 | 134 | 18.3 | -- |
| 112.19 | 0.493 | 10.1 | 0.669 | 2.51 | -2.64 | -0.403 | -- | -0.128 | 17.4 | 29.71 | 140 | 18.4 | -- |
| 112.4 | 0.494 | 10.1 | 0.704 | 2.5 | -2.66 | -- | -0.398 | -0.119 | 17.4 | 29.7 | 133 | 18.3 | -- |
| 112.56 | 0.494 | 10.1 | 0.674 | 2.49 | -2.61 | -- | -- | -0.129 | 17.4 | 29.7 | 147 | 18.5 | -- |
| 149.25 | 0.569 | 10.1 | 0.807 | -- | -3.38 | -- | 0.121 | -0.071 | -- | 43.27 | 184 | 0.724 | -- |
| 163.44 | 0.599 | 10.1 | 1.07 | 2.68 | -- | -0.107 | -- | 0.137 | 18.3 | -- | -- | -- | -- |
| 163.47 | 0.599 | 10.1 | 1.07 | 2.68 | -- | -- | -- | 0.137 | 18.3 | -- | -- | -- | -- |
| 149.24 | 0.569 | 10.1 | 0.827 | -- | -3.38 | -- | -- | -0.0688 | -- | 43.93 | 182 | 0.72 | -- |
| 123.89 | 0.518 | 10.1 | -- | 2.48 | -2.76 | -- | -- | -0.23 | 17.4 | 29.51 | 148 | 18.4 | -- |
| 537 | 1.08 | 10 | 0.996 | -- | -- | -- | -- | 0.0788 | -- | -- | -- | -- | -- |
| 193.54 | 0.651 | 10.1 | -- | 2.67 | -- | -- | -- | 0.018 | 18.3 | -- | -- | -- | -- |
| 165.63 | 0.599 | 10.1 | -- | -- | -3.54 | -- | -- | -0.212 | -- | 39.14 | 200 | 0.73 | -- |
| 563.18 | 1.11 | 10.1 | -- | -- | -- | -- | -- | -0.0317 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 100.59 | temperature | 15 | 270 | > th | dose dependent | rect. | 7 | 8 |
| 4 | 102.10 | temperature | 20 | 270 | > th | dose dependent | rect. | 8 | 5 |
| 7 | 103.15 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 6 |
| 21 | 106.97 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 57 | 110.62 | temperature | 30 | 90 | < th | dose dependent | rect. | 6 | 13 |
| 58 | 110.68 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 77 | 111.98 | temperature | 30 | 90 | < th | dose dependent | rect. | 6 | 15 |
| 90 | 112.83 | temperature | 30 | 90 | < th | dose dependent | sin | 0 | NA |
| 163 | 115.50 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 16 |
| 186 | 116.02 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 12 |
| 194 | 116.20 | temperature | 10 | 90 | > th | dose dependent | sin | 0 | NA |
| 217 | 116.92 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 8 |
| 222 | 117.04 | temperature | 30 | 30 | < th | dose dependent | rect. | 6 | 6 |
| 237 | 117.16 | temperature | 25 | 270 | > th | dose dependent | rect. | 24 | 13 |
| 248 | 117.30 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 12 |
| 318 | 118.57 | temperature | 25 | 270 | > th | dose dependent | sin | 6 | NA |
| 357 | 119.18 | temperature | 15 | 90 | > th | dose dependent | rect. | 9 | 19 |
| 367 | 119.32 | temperature | 25 | 270 | > th | dose independent | sin | 2 | NA |
| 421 | 120.19 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 14 |
| 431 | 120.39 | temperature | 25 | 270 | > th | dose independent | rect. | 24 | 14 |
| 457 | 120.71 | temperature | 25 | 270 | < th | dose independent | sin | 2 | NA |
| 468 | 120.82 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 590 | 122.49 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 16 |
| 605 | 122.65 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 20 |
| 896 | 125.75 | humidity | 90 | 270 | < th | dose independent | rect. | 8 | 7 |