BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0731500 Os03g0731500|AK099947
         (845 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0731500  Similar to Major surface glycoprotein-like         1729   0.0  

>Os03g0731500 Similar to Major surface glycoprotein-like
          Length = 845

 Score = 1729 bits (4477), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 833/845 (98%), Positives = 833/845 (98%)

Query: 1   MEDRASPGGGVCGRVLRLASVQIILILFLTQGACSSSRDGKTSPPQGLDAGEKDIYLSHS 60
           MEDRASPGGGVCGRVLRLASVQIILILFLTQGACSSSRDGKTSPPQGLDAGEKDIYLSHS
Sbjct: 1   MEDRASPGGGVCGRVLRLASVQIILILFLTQGACSSSRDGKTSPPQGLDAGEKDIYLSHS 60

Query: 61  CIHDEILHQRRRAWRKEYSVMPQVYHERRENMERLRGRHLLGVSSWHASQKNVKKPIRIY 120
           CIHDEILHQRRRAWRKEYSVMPQVYHERRENMERLRGRHLLGVSSWHASQKNVKKPIRIY
Sbjct: 61  CIHDEILHQRRRAWRKEYSVMPQVYHERRENMERLRGRHLLGVSSWHASQKNVKKPIRIY 120

Query: 121 LNYDAVGHSPDRDCKTVGDIVKLGEPPVPSIPGTPVCDPHGDPPLVGDCWYNCTVEDIAG 180
           LNYDAVGHSPDRDCKTVGDIVKLGEPPVPSIPGTPVCDPHGDPPLVGDCWYNCTVEDIAG
Sbjct: 121 LNYDAVGHSPDRDCKTVGDIVKLGEPPVPSIPGTPVCDPHGDPPLVGDCWYNCTVEDIAG 180

Query: 181 EDKKQRLRKALGQTVEWFRKALAVEPVKGNLRLSGYSACGQDGGVQLPHAYIEDGVANAD 240
           EDKKQRLRKALGQTVEWFRKALAVEPVKGNLRLSGYSACGQDGGVQLPHAYIEDGVANAD
Sbjct: 181 EDKKQRLRKALGQTVEWFRKALAVEPVKGNLRLSGYSACGQDGGVQLPHAYIEDGVANAD 240

Query: 241 LVLLVTTRPTTGNTLAWAVACERDQWGRAIAGHVNVAPRHLTAEAETLLSATLIHEVMHV 300
           LVLLVTTRPTTGNTLAWAVACERDQWGRAIAGHVNVAPRHLTAEAETLLSATLIHEVMHV
Sbjct: 241 LVLLVTTRPTTGNTLAWAVACERDQWGRAIAGHVNVAPRHLTAEAETLLSATLIHEVMHV 300

Query: 301 LGFDPHAFTHFRDERKRRRSQVTSQILDEKLGRMVTRVVLPRVVMHSRHHYGAFSQNFTG 360
           LGFDPHAFTHFRDERKRRRSQVTSQILDEKLGRMVTRVVLPRVVMHSRHHYGAFSQNFTG
Sbjct: 301 LGFDPHAFTHFRDERKRRRSQVTSQILDEKLGRMVTRVVLPRVVMHSRHHYGAFSQNFTG 360

Query: 361 LELEDGGGRGTSGSHWEKRLLMNEIMTGSVDTRSVVSKMTLALLEDSGWYQANYSMAEHL 420
           LELEDGGGRGTSGSHWEKRLLMNEIMTGSVDTRSVVSKMTLALLEDSGWYQANYSMAEHL
Sbjct: 361 LELEDGGGRGTSGSHWEKRLLMNEIMTGSVDTRSVVSKMTLALLEDSGWYQANYSMAEHL 420

Query: 421 DWGRNQGTEFVISPCNLWKGAYRCNTTQLSGCTYNREAEGYCPIVSYSGDLPKWAQYFPQ 480
           DWGRNQGTEFVISPCNLWKGAYRCNTTQLSGCTYNREAEGYCPIVSYSGDLPKWAQYFPQ
Sbjct: 421 DWGRNQGTEFVISPCNLWKGAYRCNTTQLSGCTYNREAEGYCPIVSYSGDLPKWAQYFPQ 480

Query: 481 ANKGGQSSLADYCTYYVAYSDGSCTDVNSARAPDRMLGEVRGSNSRCMASTLVRTGFVRG 540
           ANKGGQSSLADYCTYYVAYSDGSCTDVNSARAPDRMLGEVRGSNSRCMASTLVRTGFVRG
Sbjct: 481 ANKGGQSSLADYCTYYVAYSDGSCTDVNSARAPDRMLGEVRGSNSRCMASTLVRTGFVRG 540

Query: 541 SMTQGNGCYQHRCTNNSLEVAVDGIWKSCPQTGGPVQFPGFNGELICPAYHELCNTVPVP 600
           SMTQGNGCYQHRCTNNSLEVAVDGIWKSCPQTGGPVQFPGFNGELICPAYHELCNTVPVP
Sbjct: 541 SMTQGNGCYQHRCTNNSLEVAVDGIWKSCPQTGGPVQFPGFNGELICPAYHELCNTVPVP 600

Query: 601 VSGQCPKSCSFNGDCIDGTCHCFPGFHGHDCSRRSCPAKCTGHGICKANGICECESGWTG 660
           VSGQCPKSCSFNGDCIDGTCHCFPGFHGHDCSRRSCPAKCTGHGICKANGICECESGWTG
Sbjct: 601 VSGQCPKSCSFNGDCIDGTCHCFPGFHGHDCSRRSCPAKCTGHGICKANGICECESGWTG 660

Query: 661 IDCSTAVCDEQCSLHGGVCDNGKCEFRCSDYAGYTCQKGSAILPSLSMCHDVLVRDADGQ 720
           IDCSTAVCDEQCSLHGGVCDNGKCEFRCSDYAGYTCQKGSAILPSLSMCHDVLVRDADGQ
Sbjct: 661 IDCSTAVCDEQCSLHGGVCDNGKCEFRCSDYAGYTCQKGSAILPSLSMCHDVLVRDADGQ 720

Query: 721 HCAPSELSILQQLEAVVLVPNYNRLMPSGRTFLXXXXXXXXXXXXKRLACWISIQRCDED 780
           HCAPSELSILQQLEAVVLVPNYNRLMPSGRTFL            KRLACWISIQRCDED
Sbjct: 721 HCAPSELSILQQLEAVVLVPNYNRLMPSGRTFLNFFNNANCAAAAKRLACWISIQRCDED 780

Query: 781 GDNRLRVCYSACELYNTACGAGLDCSDQTLFSKREEEEKGVPCTGYGEKKSFWLMTITSP 840
           GDNRLRVCYSACELYNTACGAGLDCSDQTLFSKREEEEKGVPCTGYGEKKSFWLMTITSP
Sbjct: 781 GDNRLRVCYSACELYNTACGAGLDCSDQTLFSKREEEEKGVPCTGYGEKKSFWLMTITSP 840

Query: 841 GVSSL 845
           GVSSL
Sbjct: 841 GVSSL 845



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.136    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 33,747,022
Number of extensions: 1591807
Number of successful extensions: 3478
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 3472
Number of HSP's successfully gapped: 1
Length of query: 845
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 736
Effective length of database: 11,344,475
Effective search space: 8349533600
Effective search space used: 8349533600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 160 (66.2 bits)