BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0727800 Os03g0727800|AK109453
         (443 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0727800  Cyclin-like F-box domain containing protein         692   0.0  

>Os03g0727800 Cyclin-like F-box domain containing protein
          Length = 443

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/443 (80%), Positives = 357/443 (80%)

Query: 1   MPSXXXXXXXXXXXXSQSPPGEFDSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MPS            SQSPPGEFDSA                                  
Sbjct: 1   MPSAVVVRRARVRARSQSPPGEFDSARRTRPRMEGEEEMRGRGGKASARARSQSPPGGSG 60

Query: 61  XXXXVEVEGMGASAVPDDMLLEVFKRLSPLADIVRAAAVCRRWRLLVSGAGGLPAPPPYF 120
               VEVEGMGASAVPDDMLLEVFKRLSPLADIVRAAAVCRRWRLLVSGAGGLPAPPPYF
Sbjct: 61  SAARVEVEGMGASAVPDDMLLEVFKRLSPLADIVRAAAVCRRWRLLVSGAGGLPAPPPYF 120

Query: 121 GFFRNYAPSALPPFVPAAGVGLGLDHGALSVSPACGALLVDCXXXXXXXXXXXAGSAREL 180
           GFFRNYAPSALPPFVPAAGVGLGLDHGALSVSPACGALLVDC           AGSAREL
Sbjct: 121 GFFRNYAPSALPPFVPAAGVGLGLDHGALSVSPACGALLVDCRGRRLLLRELGAGSAREL 180

Query: 181 KLLVCDPLRKTSVSLPSRFVAGHKVXXXXXXXXXXXXFRVAVVLFGAAAHFDILVYXXXX 240
           KLLVCDPLRKTSVSLPSRFVAGHKV            FRVAVVLFGAAAHFDILVY    
Sbjct: 181 KLLVCDPLRKTSVSLPSRFVAGHKVACCALLPGAGAAFRVAVVLFGAAAHFDILVYSSAA 240

Query: 241 XXXXXXXXXLKKSMNPHQGPTVVIGDVVYKLQSEEDKYVMAVDATKMTLSAVPLPNTGML 300
                    LKKSMNPHQGPTVVIGDVVYKLQSEEDKYVMAVDATKMTLSAVPLPNTGML
Sbjct: 241 SAWEAATGALKKSMNPHQGPTVVIGDVVYKLQSEEDKYVMAVDATKMTLSAVPLPNTGML 300

Query: 301 LYAGNHWIGKTHDGRLCFFALREQLVLAKWVLESPGKWVEQPAVDLRALMNPATVGDLSR 360
           LYAGNHWIGKTHDGRLCFFALREQLVLAKWVLESPGKWVEQPAVDLRALMNPATVGDLSR
Sbjct: 301 LYAGNHWIGKTHDGRLCFFALREQLVLAKWVLESPGKWVEQPAVDLRALMNPATVGDLSR 360

Query: 361 IKLSAKISDQLRGCKLVSFGGFCEGTGALFFVMADWVVSLDLATWRFERMWRNTDESRPL 420
           IKLSAKISDQLRGCKLVSFGGFCEGTGALFFVMADWVVSLDLATWRFERMWRNTDESRPL
Sbjct: 361 IKLSAKISDQLRGCKLVSFGGFCEGTGALFFVMADWVVSLDLATWRFERMWRNTDESRPL 420

Query: 421 GDIFPVEMMVWPPVRRGDLGEKE 443
           GDIFPVEMMVWPPVRRGDLGEKE
Sbjct: 421 GDIFPVEMMVWPPVRRGDLGEKE 443



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.139    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,771,257
Number of extensions: 567888
Number of successful extensions: 1911
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1911
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 339
Effective length of database: 11,605,545
Effective search space: 3934279755
Effective search space used: 3934279755
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)