Os03g0727800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os03g0727800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 219.84 | 0.697 | 3.74 | 0.299 | 0.682 | 2.83 | -3.6 | 9.09 | -0.012 | 7.97 | 21.06 | 73 | 6.2 | 5.18 |
| 259.91 | 0.751 | 3.77 | 0.192 | 0.653 | 3.1 | -2.59 | -- | -0.0376 | 7.63 | 20.75 | 68 | 6.15 | 5.28 |
| 245.97 | 0.73 | 3.75 | 0.299 | 0.887 | 2.92 | -- | 9.3 | -0.0124 | 9.16 | 22.71 | 64 | 6.22 | 5.12 |
| 260.09 | 0.751 | 3.82 | -0.17 | 0.765 | 3 | -- | -- | -0.203 | 9.39 | 21.8 | 65 | 6.12 | 5.25 |
| 265.78 | 0.759 | 3.78 | 0.0971 | -- | 3.16 | -- | 2.91 | -0.000826 | -- | 17.17 | 107 | 5.85 | 5.25 |
| 362.56 | 0.893 | 3.71 | 0.0196 | 1.76 | -- | -0.327 | -- | 0.0784 | 9.67 | -- | -- | -- | -- |
| 362.93 | 0.892 | 3.71 | 0.00834 | 1.75 | -- | -- | -- | 0.0785 | 9.72 | -- | -- | -- | -- |
| 264.45 | 0.757 | 3.8 | -0.172 | -- | 3.08 | -- | -- | -0.134 | -- | 16.76 | 71 | 6.02 | 5.45 |
| 258.14 | 0.748 | 3.78 | -- | 0.572 | 2.67 | -- | -- | -0.141 | 9.18 | 18.09 | 62 | 6.21 | 5.23 |
| 545.96 | 1.09 | 3.75 | -0.00785 | -- | -- | -- | -- | 0.0808 | -- | -- | -- | -- | -- |
| 362.93 | 0.891 | 3.71 | -- | 1.75 | -- | -- | -- | 0.0776 | 9.72 | -- | -- | -- | -- |
| 264.69 | 0.758 | 3.8 | -- | -- | 3 | -- | -- | -0.118 | -- | 15.74 | 73 | 5.98 | 5.43 |
| 545.97 | 1.09 | 3.75 | -- | -- | -- | -- | -- | 0.0817 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 232.40 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 6 | 5 |
| 2 | 236.50 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 6 | 3 |
| 8 | 244.62 | radiation | 40.0 | 90 | < th | dose dependent | sin | 9 | NA |
| 9 | 244.97 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 6 | 6 |
| 14 | 247.52 | temperature | 25.0 | 10 | > th | dose dependent | sin | 7 | NA |
| 19 | 249.69 | radiation | 1.0 | 90 | > th | dose dependent | sin | 9 | NA |
| 33 | 252.09 | temperature | 25.0 | 90 | > th | dose independent | rect. | 6 | 5 |
| 34 | 252.26 | radiation | 40.0 | 10 | < th | dose dependent | sin | 8 | NA |
| 67 | 257.49 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 4 | 7 |
| 109 | 262.10 | radiation | 1.0 | 10 | > th | dose dependent | sin | 8 | NA |
| 141 | 266.46 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 6 | 8 |
| 143 | 266.78 | temperature | 25.0 | 10 | > th | dose independent | rect. | 6 | 6 |
| 156 | 267.77 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 2 | 10 |
| 157 | 267.77 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 24 | 12 |
| 165 | 268.24 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 20 | 16 |
| 171 | 268.74 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 22 | 14 |
| 172 | 268.79 | radiation | 10.0 | 90 | < th | dose independent | sin | 8 | NA |
| 176 | 268.96 | radiation | 10.0 | 90 | > th | dose independent | rect. | 6 | 5 |
| 192 | 269.34 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 6 | 20 |
| 196 | 269.57 | radiation | 10.0 | 90 | > th | dose independent | sin | 7 | NA |
| 197 | 269.66 | radiation | 20.0 | 90 | < th | dose independent | sin | 10 | NA |
| 204 | 269.89 | wind | 5.0 | 270 | < th | dose independent | rect. | 5 | 5 |
| 229 | 272.25 | radiation | 20.0 | 10 | < th | dose independent | sin | 9 | NA |
| 231 | 272.30 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 6 | 5 |
| 237 | 272.84 | wind | 9.0 | 270 | < th | dose dependent | rect. | 5 | 5 |
| 261 | 274.08 | wind | 7.0 | 270 | < th | dose dependent | rect. | 6 | 3 |
| 334 | 275.81 | humidity | 60.0 | 270 | > th | dose independent | rect. | 5 | 5 |
| 347 | 276.78 | temperature | 25.0 | 30 | < th | dose independent | sin | 5 | NA |
| 362 | 277.22 | temperature | 25.0 | 30 | > th | dose independent | sin | 4 | NA |
| 368 | 277.40 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 18 | 14 |
| 369 | 277.41 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 4 | 4 |
| 417 | 278.61 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 6 | 4 |
| 422 | 278.83 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 23 | 12 |
| 471 | 280.31 | temperature | 25.0 | 90 | < th | dose independent | rect. | 3 | 8 |
| 479 | 280.44 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 5 |
| 480 | 280.44 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 5 |
| 482 | 280.45 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 23 | 14 |
| 494 | 280.63 | humidity | 90.0 | 90 | < th | dose independent | rect. | 6 | 5 |
| 504 | 280.88 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 5 | 5 |
| 505 | 280.88 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 5 | 5 |
| 506 | 280.88 | temperature | 10.0 | 270 | > th | dose independent | rect. | 10 | 19 |
| 509 | 280.99 | wind | 9.0 | 270 | < th | dose independent | rect. | 10 | 19 |
| 567 | 281.90 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 3 |
| 568 | 281.90 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 3 |
| 590 | 282.18 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 3 |
| 593 | 282.18 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 3 |
| 594 | 282.18 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 3 |
| 595 | 282.18 | temperature | 10.0 | 270 | > th | dose independent | rect. | 9 | 21 |
| 604 | 282.41 | wind | 9.0 | 270 | < th | dose independent | rect. | 9 | 21 |
| 626 | 282.83 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 1 | 12 |
| 630 | 282.93 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 5 | 6 |
| 710 | 284.05 | radiation | 40.0 | 270 | < th | dose independent | rect. | 6 | 3 |
| 729 | 284.30 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 10 | 19 |
| 730 | 284.30 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 10 | 19 |
| 757 | 284.69 | radiation | 20.0 | 10 | > th | dose independent | rect. | 16 | 19 |
| 767 | 284.77 | radiation | 20.0 | 10 | > th | dose independent | rect. | 7 | 4 |
| 801 | 285.08 | temperature | 25.0 | 30 | < th | dose independent | rect. | 2 | 12 |
| 838 | 285.64 | humidity | 50.0 | 10 | > th | dose independent | rect. | 6 | 6 |
| 874 | 286.13 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 6 | 4 |
| 886 | 286.32 | temperature | 30.0 | 270 | < th | dose independent | rect. | 6 | 3 |
| 890 | 286.37 | radiation | 10.0 | 90 | < th | dose independent | rect. | 23 | 12 |
| 921 | 286.77 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 22 | 8 |
| 957 | 287.16 | radiation | 1.0 | 270 | < th | dose independent | rect. | 22 | 8 |
| 971 | 287.33 | humidity | 90.0 | 10 | < th | dose independent | rect. | 6 | 6 |
| 982 | 287.43 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 2 | 12 |