BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0724500 Os03g0724500|AK121328
         (95 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0724500  Conserved hypothetical protein                      156   3e-39
Os08g0204632  Conserved hypothetical protein                      145   5e-36
Os10g0557800  Conserved hypothetical protein                       88   1e-18

>Os03g0724500 Conserved hypothetical protein
          Length = 95

 Score =  156 bits (395), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 77/95 (81%), Positives = 77/95 (81%)

Query: 1  MESIKTQSQGSASSVPKNPAMSSCRKKKSDDATFLEDLKDHIDEFIHASMDEHKHCFKNT 60
          MESIKTQSQGSASSVPKNPAMSSCRKKKSDDATFLEDLKDHIDEFIHASMDEHKHCFKNT
Sbjct: 1  MESIKTQSQGSASSVPKNPAMSSCRKKKSDDATFLEDLKDHIDEFIHASMDEHKHCFKNT 60

Query: 61 IQKMFGMSXXXXXXXXXXXXXXXXXXLPLQTSVSQ 95
          IQKMFGMS                  LPLQTSVSQ
Sbjct: 61 IQKMFGMSKVVAERSAEAKEAEVESALPLQTSVSQ 95



>Os08g0204632 Conserved hypothetical protein
          Length = 94

 Score =  145 bits (367), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 74/95 (77%), Positives = 74/95 (77%), Gaps = 1/95 (1%)

Query: 1  MESIKTQSQGSASSVPKNPAMSSCRKKKSDDATFLEDLKDHIDEFIHASMDEHKHCFKNT 60
          MES KTQSQGSAS VPKNPAMSSCRKKKSDD TFLEDLKDHIDEFIHASMDEHKHCFKNT
Sbjct: 1  MESSKTQSQGSAS-VPKNPAMSSCRKKKSDDVTFLEDLKDHIDEFIHASMDEHKHCFKNT 59

Query: 61 IQKMFGMSXXXXXXXXXXXXXXXXXXLPLQTSVSQ 95
          IQKMFGMS                  LPLQTSVSQ
Sbjct: 60 IQKMFGMSKVVAERSAEAKEAEVESALPLQTSVSQ 94



>Os10g0557800 Conserved hypothetical protein
          Length = 97

 Score = 87.8 bits (216), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/88 (48%), Positives = 56/88 (63%), Gaps = 2/88 (2%)

Query: 8  SQGSASSVPKNPAMSSCRKKKSDDATFLEDLKDHIDEFIHASMDEHKHCFKNTIQKMFGM 67
          S  SASS    PA+SSCR+ KS++ +F+ DL+DHI EFIHAS +EH+ CF  TI++MFGM
Sbjct: 12 SHQSASSA--KPALSSCRRNKSENTSFVSDLRDHIQEFIHASPNEHRTCFTKTIKRMFGM 69

Query: 68 SXXXXXXXXXXXXXXXXXXLPLQTSVSQ 95
          S                  LPLQT+VS+
Sbjct: 70 SKVVAERSTEAKEPGAESVLPLQTTVSR 97



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.123    0.344 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,313,232
Number of extensions: 71321
Number of successful extensions: 185
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 3
Length of query: 95
Length of database: 17,035,801
Length adjustment: 64
Effective length of query: 31
Effective length of database: 13,694,105
Effective search space: 424517255
Effective search space used: 424517255
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 149 (62.0 bits)