BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0723700 Os03g0723700|AK101260
         (203 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0723700  Conserved hypothetical protein                      184   3e-47

>Os03g0723700 Conserved hypothetical protein
          Length = 203

 Score =  184 bits (468), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 111/190 (58%), Positives = 111/190 (58%)

Query: 14  EALRRRKRQGIEVQQLLLMDCVXXXXXXXXXXXXTVPLPEYERLSQSARLPDDADPLMKS 73
           EALRRRKRQGIEVQQLLLMDCV            TVPLPEYERLSQSARLPDDADPLMKS
Sbjct: 14  EALRRRKRQGIEVQQLLLMDCVGSGKEGGASSEETVPLPEYERLSQSARLPDDADPLMKS 73

Query: 74  DAPAPPAEKLXXXXXXXXXXXXKLQAAERKAQKPAKEXXXXXXXXXXXXAAWRLIEYVRS 133
           DAPAPPAEKL            KLQAAERKAQKPAKE            AAWRLIEYVRS
Sbjct: 74  DAPAPPAEKLPQPQTPTPTGTPKLQAAERKAQKPAKEPPSPPRSQQPKPAAWRLIEYVRS 133

Query: 134 RNKXXXXXXXXXXXXXXXXXXXXXXXXXXEKEAEVXXXXXXXXXXXXXXXXXRSSWLPDP 193
           RNK                          EKEAEV                 RSSWLPDP
Sbjct: 134 RNKSGGGGGGGGVAAGCSSSDGDSKSSDGEKEAEVDGEDGGGSKDKKDKKKKRSSWLPDP 193

Query: 194 DRRWPVQGFY 203
           DRRWPVQGFY
Sbjct: 194 DRRWPVQGFY 203



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.131    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,047,706
Number of extensions: 98485
Number of successful extensions: 192
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 1
Length of query: 203
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 107
Effective length of database: 12,023,257
Effective search space: 1286488499
Effective search space used: 1286488499
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 153 (63.5 bits)