BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0722100 Os03g0722100|AK058989
(535 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0722100 Conserved hypothetical protein 951 0.0
Os04g0110300 Homeodomain-like containing protein 323 2e-88
>Os03g0722100 Conserved hypothetical protein
Length = 535
Score = 951 bits (2459), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/535 (88%), Positives = 476/535 (88%)
Query: 1 IAEHVATKTKAQCMLHFLQMQIEDRFHGDEDINQNIQENTEQASAEKGAAEIPDKMEVEE 60
IAEHVATKTKAQCMLHFLQMQIEDRFHGDEDINQNIQENTEQASAEKGAAEIPDKMEVEE
Sbjct: 1 IAEHVATKTKAQCMLHFLQMQIEDRFHGDEDINQNIQENTEQASAEKGAAEIPDKMEVEE 60
Query: 61 KAEGKDTAGEKTPEKAEGNSVEAQTEDGNAIENKDANNSGGTDSVKSLNTXXXXXXXXXX 120
KAEGKDTAGEKTPEKAEGNSVEAQTEDGNAIENKDANNSGGTDSVKSLNT
Sbjct: 61 KAEGKDTAGEKTPEKAEGNSVEAQTEDGNAIENKDANNSGGTDSVKSLNTDEPKKSSDAD 120
Query: 121 XXXXXXXXXXVVKENSVDVDTSRENASNFAIDTLKSAFEAVGYFPEHEGSFADAGNPVMA 180
VVKENSVDVDTSRENASNFAIDTLKSAFEAVGYFPEHEGSFADAGNPVMA
Sbjct: 121 PPKSSSDAEPVVKENSVDVDTSRENASNFAIDTLKSAFEAVGYFPEHEGSFADAGNPVMA 180
Query: 181 LASFLAGLVEDDTATNSCRSSLKAISEVSPALQLATRHCFILEDPPSDVKDMSGNAXXXX 240
LASFLAGLVEDDTATNSCRSSLKAISEVSPALQLATRHCFILEDPPSDVKDMSGNA
Sbjct: 181 LASFLAGLVEDDTATNSCRSSLKAISEVSPALQLATRHCFILEDPPSDVKDMSGNASTTS 240
Query: 241 XXXXXXXXXXXXXXXIDSEVEGINKKGETVLSVEGKKSSPISPKGQDTDKKDECDEDPSV 300
IDSEVEGINKKGETVLSVEGKKSSPISPKGQDTDKKDECDEDPSV
Sbjct: 241 TDGDKRKDKDKTQDSIDSEVEGINKKGETVLSVEGKKSSPISPKGQDTDKKDECDEDPSV 300
Query: 301 DPKHNNGKESDDPVSLDKSVSNNKKGNTMETSNPEMIEDKASSEVNPADDSSLEGKVEMK 360
DPKHNNGKESDDPVSLDKSVSNNKKGNTMETSNPEMIEDKASSEVNPADDSSLEGKVEMK
Sbjct: 301 DPKHNNGKESDDPVSLDKSVSNNKKGNTMETSNPEMIEDKASSEVNPADDSSLEGKVEMK 360
Query: 361 KTKDAVANATTAQEQKQSQILENGKMEEPKSTEDVAADEENSSRVTANLTDSITRXXXXX 420
KTKDAVANATTAQEQKQSQILENGKMEEPKSTEDVAADEENSSRVTANLTDSITR
Sbjct: 361 KTKDAVANATTAQEQKQSQILENGKMEEPKSTEDVAADEENSSRVTANLTDSITRLKRAA 420
Query: 421 XXXXXXXXXXXXXXXDHEEEQVRQLAALMIDKLYRKVEAKVSFLTEVEHLVQRTREYTEK 480
DHEEEQVRQLAALMIDKLYRKVEAKVSFLTEVEHLVQRTREYTEK
Sbjct: 421 ATAISAAAVKAKLLADHEEEQVRQLAALMIDKLYRKVEAKVSFLTEVEHLVQRTREYTEK 480
Query: 481 TRKKLLMERNAIIAARMGSLPSRPNQPGAAGNRLPAGYGGPIVRPPPNAMPRPSS 535
TRKKLLMERNAIIAARMGSLPSRPNQPGAAGNRLPAGYGGPIVRPPPNAMPRPSS
Sbjct: 481 TRKKLLMERNAIIAARMGSLPSRPNQPGAAGNRLPAGYGGPIVRPPPNAMPRPSS 535
>Os04g0110300 Homeodomain-like containing protein
Length = 573
Score = 323 bits (828), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 221/557 (39%), Positives = 298/557 (53%), Gaps = 72/557 (12%)
Query: 1 IAEHVATKTKAQCMLHFLQMQIEDRFHGDEDINQNIQENTEQASAEKGAAEIPDKMEVEE 60
IAEHVATK+KAQCMLHFL+M I D F D D+N+ QE EQ SAE+G + + +KMEVE+
Sbjct: 43 IAEHVATKSKAQCMLHFLKMPIMDPFLHDGDVNEISQETAEQVSAEQGTSRVTEKMEVED 102
Query: 61 KAEGKDTAGEKTPEKAEGNSVEAQTE-DGNAIENKDANNSGGTDSVKSLNTXXXXXXXXX 119
K + T KT K + N E + D N + N D +SG + NT
Sbjct: 103 KTKEIKTNDRKTAAKPKLNLTETEVNLDDNVVANNDTKSSGDINVDVCSNTGVSNRSSDT 162
Query: 120 XXXXXXXXXXXVVKENSVDVDTSRENASNFAIDTLKSAFEAVGYFPEHEG--SFADAGNP 177
+TS EN SN D LK AFEAVG+ P+ EG SF +AGNP
Sbjct: 163 EPTKK---------------ETSGENTSNIVNDVLKYAFEAVGHIPKIEGLGSFTEAGNP 207
Query: 178 VMALASFLAGLVEDDTATNSCRSSLKAISEVSPALQLATRHCFILEDPPSDVKD--MSGN 235
VMAL +FL+GLV+ D T C SSLKAIS++SPALQLAT HCFIL+DPP+D+KD +S +
Sbjct: 208 VMALVAFLSGLVDHDDVTTLCCSSLKAISDMSPALQLATMHCFILQDPPNDLKDPPVSIS 267
Query: 236 AXXXXXXXXXXXXXXXXXXXIDSEVEGINKKGETVLSVEGKKSSPISPKG--QDTDKKDE 293
D++ N K E+ LSVE ++ S K + ++ K+
Sbjct: 268 FANTDCGQQKDKDATSNPSVTDND---DNLKEESALSVEEPNTTSTSSKNTRKLSNAKES 324
Query: 294 CDEDPSVDPKHNNGKESDDPVS-LDKSVSNNKK--------------------------- 325
DE P V+PK ++ + D+P+S + K S+N +
Sbjct: 325 KDESPQVEPKPSSANDCDNPISQVAKRASDNIRGHSSTVLPVSLNNTNEPCSISSQEASA 384
Query: 326 GNTMETSNPEMIE-DKASSEVNPADDSSLEGKVEMKKTKDAVANATTAQEQKQSQI-LEN 383
GNT +TS+ E IE DK E D LEGKVE+ K + V + + Q+ + Q L+
Sbjct: 385 GNTKDTSHTEHIEGDKPIYE-----DPPLEGKVELNKIEHEVTDLSAVQQHESIQTSLKK 439
Query: 384 GKMEEPKSTEDVAADEENSSRVTANLTDSITRXXXXXXXXXXXXXXXXXXXXDHEEEQVR 443
G +++ S + AD+ S+ R HEE Q++
Sbjct: 440 GYIQDHNSIKKTVADDV-----------SVQRLQRAAASAISAAAVKSKLLAKHEEYQIQ 488
Query: 444 QLAALMIDKLYRKVEAKVSFLTEVEHLVQRTREYTEKTRKKLLMERNAIIAARMGSLPSR 503
+LAAL+IDK K++AK+S TE ++LV R RE+TE+TRKKLLMER+AIIA+RM +LP R
Sbjct: 489 RLAALVIDKQLHKMQAKMSVFTEADNLVLRAREHTERTRKKLLMERSAIIASRMAALPPR 548
Query: 504 PN-QPGAAGNRLPAGYG 519
PN QPG G+RLP GYG
Sbjct: 549 PNHQPGMPGSRLPVGYG 565
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.304 0.122 0.328
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,231,255
Number of extensions: 652145
Number of successful extensions: 2752
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2744
Number of HSP's successfully gapped: 3
Length of query: 535
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 429
Effective length of database: 11,501,117
Effective search space: 4933979193
Effective search space used: 4933979193
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 158 (65.5 bits)