BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0721300 Os03g0721300|AK072156
(576 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0721300 Protein of unknown function DUF946, plant fami... 1140 0.0
Os03g0142900 Protein of unknown function DUF946, plant fami... 571 e-163
Os07g0575900 Protein of unknown function DUF946, plant fami... 442 e-124
>Os03g0721300 Protein of unknown function DUF946, plant family protein
Length = 576
Score = 1140 bits (2949), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 558/576 (96%), Positives = 558/576 (96%)
Query: 1 MLQRLGIGGRAAEETEPARFAFADALPAWPQGGGFATGRICVGELELAAVTAFEKICALS 60
MLQRLGIGGRAAEETEPARFAFADALPAWPQGGGFATGRICVGELELAAVTAFEKICALS
Sbjct: 1 MLQRLGIGGRAAEETEPARFAFADALPAWPQGGGFATGRICVGELELAAVTAFEKICALS 60
Query: 61 ATKGGGGGVTFYRPAGVPGGFSVLGHYCQSNTRPLHGHLLVAKAVAGKXXXXXXXXXXXX 120
ATKGGGGGVTFYRPAGVPGGFSVLGHYCQSNTRPLHGHLLVAKAVAGK
Sbjct: 61 ATKGGGGGVTFYRPAGVPGGFSVLGHYCQSNTRPLHGHLLVAKAVAGKPESESLPPLRPP 120
Query: 121 HDYELVCAFRADGVGEDRKSCRGYGRTGAYFWLPVPTDGYRALGLLVTAEPDKPPLREVA 180
HDYELVCAFRADGVGEDRKSCRGYGRTGAYFWLPVPTDGYRALGLLVTAEPDKPPLREVA
Sbjct: 121 HDYELVCAFRADGVGEDRKSCRGYGRTGAYFWLPVPTDGYRALGLLVTAEPDKPPLREVA 180
Query: 181 CARADLTDECEPHGSXXXXXXVGQSACWSSSTVPAAFALRGIRPTHRGMWGRGIGAGTFC 240
CARADLTDECEPHGS VGQSACWSSSTVPAAFALRGIRPTHRGMWGRGIGAGTFC
Sbjct: 181 CARADLTDECEPHGSLLQLQLVGQSACWSSSTVPAAFALRGIRPTHRGMWGRGIGAGTFC 240
Query: 241 CGAVGLSPREQGMACLKNVDLDLSAMPTLEQAHAVIRHYGPTLYFHPKEVYLPSSVSWFF 300
CGAVGLSPREQGMACLKNVDLDLSAMPTLEQAHAVIRHYGPTLYFHPKEVYLPSSVSWFF
Sbjct: 241 CGAVGLSPREQGMACLKNVDLDLSAMPTLEQAHAVIRHYGPTLYFHPKEVYLPSSVSWFF 300
Query: 301 KNGAALCKKGEDAAVELDVEGSHLPCGECNDGEYWIGLPDGKRGESIIYGDIDSAELYAH 360
KNGAALCKKGEDAAVELDVEGSHLPCGECNDGEYWIGLPDGKRGESIIYGDIDSAELYAH
Sbjct: 301 KNGAALCKKGEDAAVELDVEGSHLPCGECNDGEYWIGLPDGKRGESIIYGDIDSAELYAH 360
Query: 361 VKPAMGGTCTDVAMWVFCPFNGPARFKLGPITIPLGKTGQHIGDWEHFTLRVSNFTGELM 420
VKPAMGGTCTDVAMWVFCPFNGPARFKLGPITIPLGKTGQHIGDWEHFTLRVSNFTGELM
Sbjct: 361 VKPAMGGTCTDVAMWVFCPFNGPARFKLGPITIPLGKTGQHIGDWEHFTLRVSNFTGELM 420
Query: 421 AVYFSQHSGGRWVDASALEYTAGNKPAVYSSRNGHASYPFPGVYLQGSAALGIGIRNDAA 480
AVYFSQHSGGRWVDASALEYTAGNKPAVYSSRNGHASYPFPGVYLQGSAALGIGIRNDAA
Sbjct: 421 AVYFSQHSGGRWVDASALEYTAGNKPAVYSSRNGHASYPFPGVYLQGSAALGIGIRNDAA 480
Query: 481 RSELAVDSSAKYRIVAAEYLGEGAVEEPRWLNFMRVWGPTVVYKSRQRMERMTSAMHRRL 540
RSELAVDSSAKYRIVAAEYLGEGAVEEPRWLNFMRVWGPTVVYKSRQRMERMTSAMHRRL
Sbjct: 481 RSELAVDSSAKYRIVAAEYLGEGAVEEPRWLNFMRVWGPTVVYKSRQRMERMTSAMHRRL 540
Query: 541 RSPAERMLNKLPNELSREEGPTGPKEKNNWEGDERW 576
RSPAERMLNKLPNELSREEGPTGPKEKNNWEGDERW
Sbjct: 541 RSPAERMLNKLPNELSREEGPTGPKEKNNWEGDERW 576
>Os03g0142900 Protein of unknown function DUF946, plant family protein
Length = 548
Score = 571 bits (1471), Expect = e-163, Method: Compositional matrix adjust.
Identities = 301/574 (52%), Positives = 359/574 (62%), Gaps = 36/574 (6%)
Query: 5 LGIGGRAAEETE---PARFAFADALPAWPQGGGFATGRICVGELELAAVTAFEKICALSA 61
G G A E E P F LP WPQGG F+ G IC+GELE+A++T F+ I + S
Sbjct: 7 FGCGPSIAAEGEVRLPEPFQLPAPLPDWPQGGDFSKGTICIGELEVASITKFQSIWSCS- 65
Query: 62 TKGGGGGVTFYRPAGVPGGFSVLGHYCQSNTRPLHGHLLVAKAVAGKXXXXXXXXXXXXH 121
G TFY P +P GF LGHY Q N RPL G LLVA+ A
Sbjct: 66 ------GATFYEPQEIPDGFHCLGHYAQQNDRPLQGFLLVAREAASCQSINLKPALEKPL 119
Query: 122 DYELVCAFRADGVGEDRKSCRGYGRTGAYFWLPVPTDGYRALGLLVTAEPDKPPLREVAC 181
DY LV D +D C FW P P DGY ALG +VT P KP L V C
Sbjct: 120 DYTLVWT-STDLNDDDNSDC-------GCFWSPSPPDGYEALGYVVTRGPKKPSLDAVRC 171
Query: 182 ARADLTDECEPHGSXXXXXXVGQSACWSSSTVPAAFALRGIRPTHRGMWGRGIGAGTFCC 241
R DLTDECE S G W++ RP HRGM GRGI GTF C
Sbjct: 172 VRGDLTDECENFKSITNMG--GNCYIWNT------------RPCHRGMAGRGIPVGTFFC 217
Query: 242 GAVGLSPREQGMACLKNVDLDLSAMPTLEQAHAVIRHYGPTLYFHPKEVYLPSSVSWFFK 301
G E + CLKN D LS+MP LEQ A+I HYGPT++FHP+E+YLPSSVSWFF+
Sbjct: 218 GT---DTEESDIPCLKNFDSSLSSMPNLEQIKALIEHYGPTVFFHPQEIYLPSSVSWFFE 274
Query: 302 NGAALCKKGEDAAVELDVEGSHLPCGECNDGEYWIGLPDGKRGESIIYGDIDSAELYAHV 361
NGA L KKG++ + GS+LP G NDGEYWI +PDG R E + G++ SAELY H+
Sbjct: 275 NGATLHKKGKEMGDVILASGSNLPAGGTNDGEYWIDIPDGDRNEYVKAGNLKSAELYVHI 334
Query: 362 KPAMGGTCTDVAMWVFCPFNGPARFKLGPITIPLGKTGQHIGDWEHFTLRVSNFTGELMA 421
KPA GGT TD+AMWVFCPFNGPA K+G + L K G+H GDWEHFTLR+SNF+GEL +
Sbjct: 335 KPAHGGTFTDIAMWVFCPFNGPATIKVGFASFALQKVGRHTGDWEHFTLRISNFSGELSS 394
Query: 422 VYFSQHSGGRWVDASALEYTAGNKPAVYSSRNGHASYPFPGVYLQGSAALGIGIRNDAAR 481
+YFSQHSGG WVDA LE+ +GNK VYS+++GHASY PG YL GS G+G+RNDAAR
Sbjct: 395 IYFSQHSGGDWVDACDLEFISGNKAIVYSAKDGHASYAHPGCYLLGSEKAGVGVRNDAAR 454
Query: 482 SELAVDSSAKYRIVAAEYLGEGAVEEPRWLNFMRVWGPTVVYKSRQRMERMTSAMHRRLR 541
S++ VDSS +Y+I++A LG+ AV EP WL +MR WGPTV Y SR ++ + S + LR
Sbjct: 455 SDILVDSSTRYKIISAGNLGD-AVIEPCWLQYMREWGPTVEYNSRSEIDAVLSFLPFFLR 513
Query: 542 SPAERMLNKLPNELSREEGPTGPKEKNNWEGDER 575
AE +LN LP EL EEGPTGPKEKNNWEGDER
Sbjct: 514 FTAEAILNSLPVELYEEEGPTGPKEKNNWEGDER 547
>Os07g0575900 Protein of unknown function DUF946, plant family protein
Length = 522
Score = 442 bits (1137), Expect = e-124, Method: Compositional matrix adjust.
Identities = 257/550 (46%), Positives = 319/550 (58%), Gaps = 50/550 (9%)
Query: 33 GGFATGRICVGELELAAVTAFEKICALSATKGGGGGVTFYRPAGVPGGFSVLGHYCQSNT 92
GGFA G I +G LE+ VT F K+ + T GGG TF+RP VP GFS LGHY Q N
Sbjct: 13 GGFAKGSIDLGGLEVRQVTTFAKVWS---TGQDGGGATFFRPEQVPAGFSALGHYAQRND 69
Query: 93 RPLHGHLLVAKAVAGKXXXXXXXXXXXXHDYELVCAFRADGVGEDRKSCRGYGRTGAYFW 152
RPL GH+LVA+ V+G DY V + + D A+FW
Sbjct: 70 RPLFGHVLVARDVSGGGLLAPPL------DYAPVWSSQDDA---------------AHFW 108
Query: 153 LPVPTDGYRALGLLVTAEPDKPPLREVACARADLTDECEPHGSXXXXXXVGQSACWSSST 212
LP P DGYRA+G+ VTA PDKPP EVAC RAD TD CE ++ W
Sbjct: 109 LPTPPDGYRAIGVAVTASPDKPPRDEVACVRADFTDACE-----------AEATVWDKD- 156
Query: 213 VPAAFALRGIRPTHRGMWGRGIGAGTFCCGAVGLSPREQGMA-CLKNVDLDL-SAMPTLE 270
F+ +RP RG+ RG+ AGTF + CLKN S MP L
Sbjct: 157 ---GFSAVALRPAVRGVDARGVHAGTFVLARSDATAASASALACLKNNGAAYTSCMPDLA 213
Query: 271 QAHAVIRHYGPTLYFHPKEVYLPSSVSWFFKNGAALCKKGEDAAVELDVEGSHLPCGECN 330
Q +A++ Y P L+ HP E YLPSSV+WFF+NGA L +KG + +GS+LP G N
Sbjct: 214 QVNALLAAYAPQLFLHPDEPYLPSSVTWFFQNGALLYQKGSQTPTPVAADGSNLPQGGGN 273
Query: 331 DGEYWIGLP-DGKRGESIIYGDIDSAELYAHVKPAMGGTCTDVAMWVFCPFNGPARFKLG 389
DG YW+ LP D + E + GD+ A++Y KP +G T TD+A+W F PFNGPAR K+G
Sbjct: 274 DGGYWLDLPVDNFQRERVKKGDLAGAKVYVQAKPMLGATATDLAVWFFYPFNGPARAKVG 333
Query: 390 PITIPLGKTGQHIGDWEHFTLRVSNFTGELMAVYFSQHSGGRWVDASALEY-TAGNKPAV 448
P+TIPLGK G+H+GDWEH TLRVSNF+GEL+ +YFSQHS G WVDA LEY GN+P+
Sbjct: 334 PLTIPLGKIGEHVGDWEHVTLRVSNFSGELLRMYFSQHSAGAWVDAPQLEYLDGGNRPSA 393
Query: 449 YSSRNGHASYPFPGVYLQGSAALGIGIRNDAAR-SELAVDSSAKYRIVAAEYL--GEGAV 505
YSS +GHA YP G+ LQG A LG+GIRND R S L + + +V+AEYL G G V
Sbjct: 394 YSSLHGHALYPRAGLVLQGDARLGVGIRNDCDRGSRLDTGGAGRCEVVSAEYLGGGGGGV 453
Query: 506 EEPRWLNFMRVWGPTVVYKSRQRMERMTSAMHRRLRSPAERMLNKLPNELSREEGPTGPK 565
EP WL F R WGP Y + + R+ + R R ER L KL + EGPTGP+
Sbjct: 454 AEPTWLLFDREWGPREEYDIGREINRVAKLLPRSTR---ER-LRKLVESVFVGEGPTGPR 509
Query: 566 EKNNWEGDER 575
K +W DER
Sbjct: 510 MKGSWRNDER 519
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.137 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 22,803,749
Number of extensions: 1079983
Number of successful extensions: 2779
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2766
Number of HSP's successfully gapped: 3
Length of query: 576
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 470
Effective length of database: 11,501,117
Effective search space: 5405524990
Effective search space used: 5405524990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)